Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P02
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 31 0.89
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 31 1.2
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 31 1.2
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 4.8
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697 29 4.8
06_03_1214 + 28469848-28473048 29 4.8
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 6.3
05_04_0035 + 17378541-17381276 29 6.3
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 28 8.3
07_01_0245 - 1803170-1803887,1803971-1804641 28 8.3
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = +1
Query: 202 GRGEYRQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LG 381
G G+ R+R + + +RE R ++ +R S+D Q + +R R G G
Sbjct: 3 GEGKSRKRRSSPSSGEEEERERKKRRDKKESRRSSRDEQAEEEEEEERRRRKKKKHGDRG 62
Query: 382 QNSDAHERAHHSEQRQR 432
++ + + HS+++++
Sbjct: 63 KDKERDSKEKHSKEKEK 79
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +1
Query: 196 LLGRGEYRQRGTVFGLPQLLQREPTVPRGQQRAR-----HGSQDPQQDPGARRKRLRH-- 354
+LG G+ RGT G L++ + G + R H + P+ G +R
Sbjct: 63 VLGGGQGGGRGTTAGAGGLVRGGSELAVGAELRRRVPTCHVNDFPELGIGGTPVLVRRWR 122
Query: 355 PGLHQG*LGQNSDAHERAHHSEQRQRHYEN 444
P H+ S H HH QRQRH+ +
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHHHH 152
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 650 CVSTGDYDKAVTITKSL--QDDNVGFMIEELIDRLLRARKPNVFAY 781
C+ Y+ A+++ +SL +D NV F+++ +D+L+R + VFAY
Sbjct: 495 CLLAQAYNHAISVIQSLGEEDINVKFLVQ--LDKLIRLLETPVFAY 538
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 581 EPTMMDSHVAFLNKQLLMDLLFKCVSTGD-YDKAVTITKSLQDDNVGFMIEELIDRLLRA 757
+P+++ V F+ L + KC+ GD + V T + NV + EL+ +A
Sbjct: 155 QPSLLPEGVQFVLNTL--PVYDKCIGDGDGFTAYVPTTDPRESANVPLEVHELVIARTQA 212
Query: 758 RKPNVFAYADXLWSA 802
RK + AD L S+
Sbjct: 213 RKCRDYQSADALLSS 227
>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
Length = 375
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 332 APGSCWGSCDPCRARC*PLGTVGSRCSSCGSP 237
A + W CDPC T GS C SCG+P
Sbjct: 18 AAEASW-ECDPCACAA----TAGSPCGSCGAP 44
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 483 MPQMTTMPTRSLTILVMSLALFGMMGALMSVTILTESSLM*ARVSQSFSSRTGILLGILR 304
+P ++ T + T +S+A F L+ + +L+ +S + Q SS G L G+L
Sbjct: 6 LPCSSSSSTTTTTTTKLSVAFF----RLLVILLLSFASPTSSCTEQEESSLIGFLEGLLP 61
Query: 303 PMSGPLLTSW 274
+G L TSW
Sbjct: 62 GHNGSLSTSW 71
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 581 EPTMMDSHVAFLNKQLLMDLLFKCVSTGD-YDKAVTITKSLQDDNVGFMIEELIDRLLRA 757
+P+ + V F+ L + KC+ GD + V+ T + NV + EL+ +A
Sbjct: 51 QPSSLPEGVQFVLNTL--PVYDKCIGDGDGFTAYVSTTDPRESANVPLEVHELVIARTQA 108
Query: 758 RKPNVFAYADXLWSA 802
RK + AD L S+
Sbjct: 109 RKCRDYQSADALLSS 123
>05_04_0035 + 17378541-17381276
Length = 911
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 202 GRGEYRQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLH---QG 372
G G T F PQ+ Q P+ Q A +Q PQ GA + PG H +
Sbjct: 748 GYGTSHPWHTGFNAPQVQQPSYGGPQSSQHAVGSTQPPQAQFGAPQAPPPLPGFHYQNRP 807
Query: 373 *LGQNSDAHER 405
GQ D H R
Sbjct: 808 EYGQAVDQHNR 818
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 290 GPDMGRKIPNRIPVRDENDCDTRAYIKD 373
GP G +P+R P++D DC+ A I+D
Sbjct: 420 GPSRGGCVPSRNPLKDPGDCEAVA-IRD 446
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 291 PLLTSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISFPVKGSLSSLY 145
P + YC+ L +L PL + PSP+ S P G+L++ +
Sbjct: 33 PSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,997,957
Number of Sequences: 37544
Number of extensions: 456013
Number of successful extensions: 1357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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