Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_P02
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical ... 31 1.1
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 5.6
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 28 7.4
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 7.4
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 7.4
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 28 7.4
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 9.8
AF067220-6|AAC16980.2| 303|Caenorhabditis elegans Hypothetical ... 28 9.8
>AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical
protein Y110A2AR.1 protein.
Length = 251
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 131 PYIGQYKLLKLPFTGKLIEHVDYW---GEGSIVNGGLYSGFRNCY 256
P IG +K+LK P +LIE + YW G IV+ L + + +C+
Sbjct: 17 PVIGSFKVLKKPTKPRLIECMHYWTIYGSFLIVDWFLSTFYVSCF 61
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 256 QREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDAHERAHHSEQRQR 432
+R P PR ++R+ ++ P RR++ R P + + Q D R H S + +R
Sbjct: 288 RRSPEDPRERRRSPEDRTVRRRSP-ERRRQQRSPSVERRKSPQRRDERRRRHDSSENER 345
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 70 TGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPL 168
TG+ P QR S L+P+V RA AQ P+
Sbjct: 114 TGRPPPPSTQRSTATSSLKPSVTRARPVAQKPI 146
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +1
Query: 217 RQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDA 396
+QR +P+ Q+ + QQ SQ+P Q P ++ + + P L Q
Sbjct: 186 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 244
Query: 397 HERAHHSEQRQRHYEN 444
H ++ + Q++Y+N
Sbjct: 245 HVYSNPQQGYQQNYQN 260
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +1
Query: 217 RQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDA 396
+QR +P+ Q+ + QQ SQ+P Q P ++ + + P L Q
Sbjct: 208 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 266
Query: 397 HERAHHSEQRQRHYEN 444
H ++ + Q++Y+N
Sbjct: 267 HVYSNPQQGYQQNYQN 282
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 70 TGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPL 168
TG+ P QR S L+P+V RA AQ P+
Sbjct: 114 TGRPPPPSTQRSTATSSLKPSVTRARPVAQKPI 146
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 583 TYNDGLARGFPQQATSYGSAFQVRVDRGLRQGSDYHE 693
T DGLA+ PQ++ G+ Q + G R+ +H+
Sbjct: 202 TVKDGLAKILPQRSQENGNIIQGGILNGFRERGIFHD 238
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/53 (24%), Positives = 19/53 (35%)
Frame = +1
Query: 280 GQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDAHERAHHSEQRQRHY 438
G H S GA + H G H G + H HHS+ ++ +
Sbjct: 674 GTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKHSKKQH 726
>AF067220-6|AAC16980.2| 303|Caenorhabditis elegans Hypothetical
protein C33E10.8 protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 593 MDSHVAFLNKQLLMDLLFKCVS--TGDYDKAVTITKSLQDDNVGFMIEELI 739
MD+H +K+L D LFK ++ K++TIT+S D+ + ELI
Sbjct: 89 MDNHEVVFDKRLTADQLFKKLAPFLRKLPKSITITES--SDDCFYFFRELI 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,469
Number of Sequences: 27780
Number of extensions: 378867
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -