Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O24
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   2.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   4.6  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.1  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   8.0  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 257 NVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
           +++ + + R+P + L  HG  M +   +  +R N +RS
Sbjct: 746 DIIQYYSERTPGSSLIDHGFAMEFNYVKAENRENGLRS 783


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 298 IINSWVVHGVHYYTW-CFPPQLNPQR 372
           II SWV HG+  Y W C  P   P R
Sbjct: 415 IITSWVCHGL--YVWSCLAPVFFPYR 438


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 197 IFYFKPTYVKRN--YYTVNKYRNVLSHQNWRSPAAILSTH 310
           IF+F P   + +  Y    ++R +  ++N+R+ A + S+H
Sbjct: 257 IFFFMPETSEWHILYKRAKRFRKITGNENYRTEAELASSH 296


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 230  NYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTR 340
            NY+ V   R +L H N  S + +L T  L ++ T  R
Sbjct: 1473 NYFKVEIGRKLLQHLNVLSDSKVLETASLSLLKTNPR 1509


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 285 VRPQYYQLMGCSWCTLLHVVLPAATQSAA*RNICMTCHMIFGHSSSITKVLHSECV 452
           V+ Q+YQ+M C+ C  L    P           C  C  +  H   +TKVL S C+
Sbjct: 417 VQRQFYQIMRCAVCAELFSYSPGLQ--------CENCSFVC-HKKCVTKVLAS-CI 462


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 531 ADVDGLAPKAIENEVESSDGVEKGSGGGVRLKKEL 635
           +D+D L+   IE    SS  +   +  G+RL K++
Sbjct: 886 SDIDSLSSSLIEKPRASSSPIHHANNNGLRLLKDV 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,653
Number of Sequences: 5004
Number of extensions: 66667
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)