Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O23
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    42   1e-04
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   4.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   9.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   9.4  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 193 LKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDIL 360
           LKK SKR+  RLR +IEKK  E  RKQ+             P    IPN  P+K+ IL
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKIL 61


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -1

Query: 294 ILFSFFTLLTIMLFHFFFYFVSKTC 220
           +LF+   +L+++  +FFF+++ + C
Sbjct: 24  LLFALVIILSVIFINFFFFYLCRCC 48


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 330 RNLNWLGFLRFRILFS 283
           RNLNW  +L F ILFS
Sbjct: 449 RNLNWNVYLNFIILFS 464


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 320  IGLVFLDLGFFLASLRCLR 264
            +G+ F+DLG +  S +CLR
Sbjct: 1201 VGVSFIDLGSYTLSAKCLR 1219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,948
Number of Sequences: 5004
Number of extensions: 28109
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)