Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O19
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       57   2e-08
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    57   2e-08
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       50   3e-06
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    50   3e-06
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    47   1e-05
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   4.1  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 255
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +3

Query: 282 ACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--Y 455
           A + +      +     S   K+  + +CPD A V+++MLY+SS  ALK SL G++    
Sbjct: 70  AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQ 128

Query: 456 IQATDLSEASQEAVEEKLRATDR 524
           +QA+++S+  +++V+  L +  R
Sbjct: 129 VQASEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 255
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +3

Query: 282 ACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--Y 455
           A + +      +     S   K+  + +CPD A V+++MLY+SS  ALK SL G++    
Sbjct: 70  AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQ 128

Query: 456 IQATDLSEASQEAVEEKLRATDR 524
           +QA+++S+  +++V+  L +  R
Sbjct: 129 VQASEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +3

Query: 306 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 482
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE 
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149

Query: 483 SQEAVEEKL 509
           S + +  KL
Sbjct: 150 SHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 201
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +3

Query: 306 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 482
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE 
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149

Query: 483 SQEAVEEKL 509
           S + +  KL
Sbjct: 150 SHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 201
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 306 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 482
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE 
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149

Query: 483 SQE 491
           S +
Sbjct: 150 SHK 152



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = +3

Query: 324 SEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAV 497
           SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+  +++V
Sbjct: 147 SEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSV 202

Query: 498 EEKLRATDR 524
           +  L +  R
Sbjct: 203 KSDLMSNQR 211



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 82  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 201
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 593 RQGRSVGERVRFRRELVCKCC 531
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,768
Number of Sequences: 27780
Number of extensions: 293206
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)