Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O15
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 123 3e-29
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 34 0.029
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.4
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 27 2.5
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 4.4
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 27 4.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 5.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 7.6
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 26 7.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 7.6
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 26 7.6
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 123 bits (297), Expect = 3e-29
Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
Frame = +1
Query: 154 WLXLESDPGLFTLLLEDFGVKGVQVEEIY--DLHKPLKSP-VYGFIFLFRWIEERRSRRK 324
W +ESD G+FT L+E+ GVK V+V+E+Y D+ + P +YG IFLF+W +
Sbjct: 3 WTTIESDAGVFTDLIENLGVKDVEVDELYSLDVDSLRQFPDIYGIIFLFKWNSK------ 56
Query: 325 FVEQIESFVRDEETINNIFFAQQMVPNGCATHALLSILLN-CPNLHLGETLSRLKHHTVG 501
V++ + + D ++++NIFFA+Q++ N CAT ALLS+LLN + LG TLS K +
Sbjct: 57 -VDKPDGTM-DYDSMDNIFFAKQVINNACATQALLSVLLNHSDEIDLGTTLSEFKDFSKT 114
Query: 502 MNPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEXYHFVSLVPINGHL 681
+ PE KG A+GN+ + C HNS AR + V E YHF++ IN
Sbjct: 115 LPPELKGEALGNSEHIRCCHNSF----ARSDPFISEEVRAATDEDEVYHFIAYTNINNVF 170
Query: 682 FELXGL 699
+EL GL
Sbjct: 171 YELDGL 176
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 33.9 bits (74), Expect = 0.029
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Frame = +1
Query: 154 WLXLESDPGLFTLLLEDFGVKGVQVEEIYDLHK-P--LKSPVYGFIFLFRWIEERRSRRK 324
W LE+ P + L+ GV+ V +++ L + P + PV+ +F+F S K
Sbjct: 2 WRPLENTPEVLEPYLQKIGVQDASVFDLFSLEEIPEYIPRPVHALLFVFP-----SSGTK 56
Query: 325 FVEQIESFVRDEETINNIFFAQQMVPNGCATHALLSILLNCP---NLHLGETLSRLKHHT 495
+ + + + + + + Q +PN C T LL + N ++ + + L
Sbjct: 57 TIYKGSRILPKDS--DKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTA 114
Query: 496 VGMNPENKGWAIGNTPELACAHNSHAIP 579
G + E + I ++ EL H + A P
Sbjct: 115 EGSSIEERAKLIEDSKELEALHAAFAGP 142
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 275 PYTGLFKGLCRS*ISSTCTPLTPKSSNSKVKRPGSLSNXSQPS 147
P TG K + + ST P+TPK +S + GS S+ S PS
Sbjct: 637 PETGPNKPSKNNILKSTQVPVTPKQKSSTANK-GSTSSPSPPS 678
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 647 ILLAWYQSMDICLNXMVLTISYGSWSVG 730
++ WY++ D+ L V + S WSVG
Sbjct: 162 VVTLWYRAPDVLLGSRVYSTSIDIWSVG 189
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 112 MKNMPVELNSLTEGWLXLESDPGLFTLLLEDFGV 213
+ +MP+E ++TE + L S L + LL+ FG+
Sbjct: 778 LHDMPIEAGTVTEQGVVLPSALNLTSALLQSFGL 811
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 409 CATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGW--AIGNTPE 546
C+T L S+ N ++H+ TL +L+ P N+GW A+G PE
Sbjct: 278 CST-LLASLYSNEFDMHILPTLLKLQETMTRDYPVNQGWKQAMGRYPE 324
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 293 LNKKINPYTGLFKGLC 246
L+ K+NPYTG GLC
Sbjct: 123 LDLKLNPYTGTSLGLC 138
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 295 WIEERRSRRKFVEQIESFVRDEETINNIFFAQQMVPNG 408
W+ + K +E++ SF+ E TI N A +++ NG
Sbjct: 320 WVTRLNATCKQIEKVPSFIDYETTIKNA--ANEIIQNG 355
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.2 bits (55), Expect = 5.8
Identities = 26/122 (21%), Positives = 46/122 (37%)
Frame = +1
Query: 163 LESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLKSPVYGFIFLFRWIEERRSRRKFVEQIE 342
LE D + L E K + + K + ++ F + S F+E E
Sbjct: 112 LEKDKKVIVPLAEPLSAKDTNLRASFVPPKTVTPGIFSCSNKFFLNPDGWSYDLFLEIPE 171
Query: 343 SFVRDEETINNIFFAQQMVPNGCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKG 522
S ++ +N +F ++ C LL L N L ++ + + PE+KG
Sbjct: 172 SIFTQKDYLNGRYFRKRAFYLTCIAKHLLENLGNEVKLEFVAFNDDIRRPILAILPESKG 231
Query: 523 WA 528
+A
Sbjct: 232 FA 233
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 728 PRTMIHRIWLRPXSSNKCPLIGTKLTKWYXS---PVNLPVE 615
P ++H ++ P ++ + P G + +WY + P+ LP++
Sbjct: 383 PPALLHWLYKDPQNNVQGPFTGVDMHQWYRAGYFPLGLPIK 423
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 LNCPNLHLGETLSRLKHHTVGMNPENKGW-AIGNTPELACAHNSHAIPQA 585
L+CP++ + R+ +T+ M+P N + AIG T A ++ + ++
Sbjct: 182 LDCPSILVNYNPYRINLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKS 231
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 223 QVEEIYDLHKPLKSPVYGFI 282
QV+E+ + HK K P+YG I
Sbjct: 9 QVQELAEKHKANKIPIYGVI 28
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 669 DWYQANKMVXFTCKSASRNSSIFVCLFACLW 577
D++ A++MV T A N S+F CL+ LW
Sbjct: 426 DFFFADQMVSLTY--ACGNISLFFCLYKRLW 454
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 RRSRRKFVEQIESFVRDEETI-NNIFFAQQMVPNGCATHALLSILL 441
R + + ++E ++D + N+FF ++ P G AT +S+ L
Sbjct: 375 RGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRL 420
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,677
Number of Sequences: 5004
Number of extensions: 73347
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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