Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O13
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 144 1e-35
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 28 1.9
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 2.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 3.4
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 4.4
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 27 4.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 5.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.8
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.8
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 7.8
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 144 bits (350), Expect = 1e-35
Identities = 72/140 (51%), Positives = 90/140 (64%)
Frame = +1
Query: 208 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 387
R + IICTIGP S NV L K+ + GMN+ RMNFSHGS+EYH I N R+A +
Sbjct: 26 RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT----- 80
Query: 388 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNTDTIYVDYK 567
F LAIALDTKGPEIRTGL GG + + G + TT Y EK N +Y+DYK
Sbjct: 81 NPLFPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYK 138
Query: 568 NITNVVKPGNRIFIDDGLIS 627
NIT V++PG I++DDG++S
Sbjct: 139 NITKVIQPGRIIYVDDGILS 158
Score = 52.4 bits (120), Expect = 8e-08
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +2
Query: 671 IENGGMLGSRKGVNLPGIPVDLPAVSXKDKSDLLFGV 781
+ N G + S+KGVNLP VDLPA+S KDK+DL FGV
Sbjct: 174 VNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGV 210
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 135 GLFNCTRESHGYVHRLIGLIYS*YFTVMLKVLN 37
GLF C +S + RL+ L Y Y T L++++
Sbjct: 118 GLFYCVCDSRHFTQRLVTLYYLNYLTKYLELMD 150
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 368 RVTALN*VHLSLWPSHWT-LKDLRSELDSWKAAAQL 472
R++ L +HLS WPS+W L + DS A+L
Sbjct: 178 RLSLLRWIHLSSWPSNWKWLAYFFASADSHSEVARL 213
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 118 GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 237
G + + ++ L+ + D+D+K +YI+LS T+G
Sbjct: 15 GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 4.4
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = -1
Query: 464 PP--PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVSAWYSWEPCEKFILAT 291
PP PS+ P + + P + EPS+ L LR + + +P K L T
Sbjct: 430 PPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVT 489
Query: 290 FIPVSIIFSSTATLRDAGPIVQI--IPER 210
IP +S + D + + IPE+
Sbjct: 490 SIPTKPHQASVEKVYDLNSKINLKNIPEQ 518
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 494 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 381
SP ST+A P K+P + L+S +KEK PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 546 YNLRGLQEHNECREARKPNLHR*W 617
++LRG H C EA+ PN+ W
Sbjct: 89 HDLRGSHLHTVCEEAKCPNIGECW 112
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 232 IGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI 411
I P ++ + ++++ V R+N +H S ++ + SY +LG S I
Sbjct: 1194 ISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKI 1253
Query: 412 ALDTK 426
++ K
Sbjct: 1254 GIEIK 1258
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 180 RH*LQVFVHPSLRNNLYYWTGIP*CSCAR 266
RH L++ V L N+Y WT +P C +R
Sbjct: 2344 RHFLKLVV---LWKNIYVWTNVPDCDISR 2369
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 494 SPFFSSTSAEPPPSKSP 444
SP FSS+S PPP P
Sbjct: 231 SPIFSSSSTPPPPPPRP 247
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 676 KRRYARIPERRQPARHTXGPTRSLRXGQV 762
+ RY IPE R+ ARH PT + ++
Sbjct: 369 RERYKHIPEIRRIARHRHLPTNVKKAAEI 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,142
Number of Sequences: 5004
Number of extensions: 58588
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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