Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O08
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    89   9e-19
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   4.3  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    27   4.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.7  
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    25   10.0 

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 88.6 bits (210), Expect = 9e-19
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = +1

Query: 265 GRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEG 444
           G+L++    + +K+    +   +  ++I    + +F   + L++ LK+       GF + 
Sbjct: 20  GKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQE 79

Query: 445 EQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN 624
           + + +    K N++  + +KE S+KGWNWG A F G+ L F+V +  AFEIP+  V+  N
Sbjct: 80  DLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNTN 139

Query: 625 -TGKNEVTLEFHQNDD 669
            +GKNEV LEF   DD
Sbjct: 140 LSGKNEVALEFSTTDD 155


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -1

Query: 450 LLTFFKTSVSVQSTIFEKQT*APRTNELLEIHQLNVIS*YLFNFAGFTILENYVLVC 280
           LL+ F++S   +    +++  AP++   L+   + V+S +L + AGF I+E Y+L C
Sbjct: 279 LLSSFRSSFE-RDRRRQQEFLAPKSLTTLD---MAVVSEWLNSIAGFMIVEYYILQC 331


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 299 KIMFWSVIFNLPWYHVSFYFCGNIVIL 219
           K +FW  I  LPWY+ S      I IL
Sbjct: 309 KYIFWLAIATLPWYNWSILEKSKIKIL 335


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 687 WKCASTFPPVKWPMIWMQLKHSPTSXE 767
           W+ ASTFPP K   +  +LK +  S E
Sbjct: 129 WEKASTFPPEKLESLRSKLKDAMASTE 155


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 165 VKLAYISLRLNNSFND*LVTVFYSV*RKTFHLLVFKFNFQFTHYKLRYSLKCN 7
           +KL Y+ + ++ +      T    V ++ FH +V K+  Q+ +Y ++  L CN
Sbjct: 1   MKLNYVGIVISRAMPK---TAKVRVAKEKFHPVVKKYVTQYQNYMVQDDLNCN 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,602
Number of Sequences: 5004
Number of extensions: 66549
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)