Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O07
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    26   6.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   6.2  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   6.2  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 33  RLLILNKILLFTDFEWCDR*RTHNGEQW 116
           R + L K+LL TD  WC+   +H G Q+
Sbjct: 223 RAIPLEKMLLETDAPWCEVRPSHAGHQF 250


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 330  PXXPPXXSXXPGPXPXXXXSKNPXPQXFPXXPPFLRGXPP 449
            P  PP     P P P       P P   P  P    G PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 238 KTKIXXXNNVLRIPLLRPSNGKWYSSPYTHLQRHNIDTYYRH 113
           + KI    +    P  +  NG WY++PY    +H  +  Y H
Sbjct: 71  EAKINHSYSAFYRPFTKRENGLWYANPY--YMQHGPNGNYHH 110


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  KELIMENSGGNMCRCCASEGV 153
           +EL+   SG N+C  C++ GV
Sbjct: 11  RELVQSVSGNNLCADCSTRGV 31


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 91  YLSHHSKSVNNSILFKINRRY 29
           Y+SHH +S+  S++ + NR Y
Sbjct: 357 YMSHHKESIIKSVIREANRVY 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,399
Number of Sequences: 5004
Number of extensions: 36185
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)