Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O07
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 33 1.4
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 31 5.5
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 31 5.5
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 31 5.5
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 31 5.5
BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein. 31 5.5
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 31 5.5
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 31 5.5
AJ315949-1|CAC51389.1| 231|Homo sapiens hypothetical protein pr... 30 9.7
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 324 PXPXXPPXXSXXPGPXPXXXXSKNPXPQXFPXXPPFLRGXPP 449
P P PP P P P + P PQ P P + R PP
Sbjct: 73 PPPPPPPPQQPPPPPPPPSPGASYPPPQPPPPPPLYQRVSPP 114
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 561 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 617
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 618 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 653
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 662
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 662
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 662
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
>BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein.
Length = 1075
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 12 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 68
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 69 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 104
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 662
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 5.5
Identities = 26/96 (27%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = +2
Query: 266 PGKXPLDGVGHYXX-GFXXNPXPPXTPXXFPKXRAXXPXXPFQKPPXPKXSXTXPFFKGX 442
PG P +G GF P P P PK P PP + P F G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPG--PKGEPGK-IVPLPGPPGAEGLPGSPGFPGP 662
Query: 443 TPXXGXKXXXXXPPXPTKXGGXGXPQFXXRGXPXXK 550
G P P + G G P G P K
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
>AJ315949-1|CAC51389.1| 231|Homo sapiens hypothetical protein
protein.
Length = 231
Score = 30.3 bits (65), Expect = 9.7
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +3
Query: 324 PXPXXPPXXSXXPGPXPXXXXSKNPXPQXFPXXPPFLRGXPP 449
P P PP PGP P S P P P PP L G P
Sbjct: 118 PRPAAPPPA--LPGPTPLPPPSPRPSPPLSP-RPPLLLGCSP 156
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,278,133
Number of Sequences: 237096
Number of extensions: 2136880
Number of successful extensions: 5380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4852
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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