Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O07
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.8
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P P PP P G A P P P P P G P + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Query: 502 GXGXP-PIXXXGXS-PXXNXXXPXXXXXGGXXPXG 600
G G P P G + P N P G P G
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKG 250
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P P PP P G A P P P P P G P + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Query: 502 GXGXP-PIXXXGXS-PXXNXXXPXXXXXGGXXPXG 600
G G P P G + P N P G P G
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKG 250
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P P PP P G A P P P P P G P + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Query: 502 GXGXP-PIXXXGXS-PXXNXXXPXXXXXGGXXPXG 600
G G P P G + P N P G P G
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKG 250
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P P PP P G A P P P P P G P + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Query: 502 GXGXP-PIXXXGXS-PXXNXXXPXXXXXGGXXPXG 600
G G P P G + P N P G P G
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKG 250
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 321 TPXPXXPPXXSXXPGPXPXXXXSKNPXPQXFPXXPP 428
TP P PP P P P + P P P PP
Sbjct: 284 TPRPPPPPSSGMWP-PPPPPPPGRTPGPPGMPGMPP 318
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 321 TPXPXXPPXXSXXPGPXPXXXXSKNPXPQXFPXXPP 428
TP P PP P P P + P P P PP
Sbjct: 294 TPRPPPPPSSGMWP-PPPPPPPGRTPGPPGMPGMPP 328
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P PP P G P P P P P+ G PP PP G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPG-GLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 502 G-XGXPP 519
G G PP
Sbjct: 779 GFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P PP P G P P P P P+ G PP PP G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPG-GLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 502 G-XGXPP 519
G G PP
Sbjct: 779 GFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 PXXPXNPPXFPXXQGXXPXXAXPKTPXPKXFPNXPLF*GGXPPXXXKXXXXXPPXXXKXG 501
P PP P G P P P P P+ G PP PP G
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPG-GLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 502 G-XGXPP 519
G G PP
Sbjct: 362 GFKGGPP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,302
Number of Sequences: 27780
Number of extensions: 276263
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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