Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O05
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    31   0.21 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.5  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    27   4.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.8  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   5.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   5.8  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 356 QEFSSCCLLSMQRS*WSARELCQHKFM 436
           ++F SCCL       WSA+EL QH F+
Sbjct: 234 RDFVSCCLDLNPNMRWSAKELLQHPFI 260


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 423 NINSCPYVLQLLKNPNEANLN 485
           +INS PY   +++NP+E NL+
Sbjct: 305 SINSVPYTSNIVENPSEDNLS 325


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 697 CGRTTNDFVSDGYVPAATLPFRIRGGGSHLALAGVHPLR 581
           CG T+ D  +    P   L F+  G   + A  G H LR
Sbjct: 49  CGLTSEDLEAGELPPVDVLTFKKSGKPYYFAFGGCHRLR 87


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 119  RVGFILLEPTLENVFNLDIHRGCSGDPDQKCCCTI 223
            R GF+ L   L NV + D+ +   GD D     T+
Sbjct: 1073 RRGFLRLNKKLGNVIHYDLRKSSEGDVDSNYVTTM 1107


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 118 TCRFYIIGT-YIGKCF*FGHSSWLFWRSRPKVLLHNHAGHRTDLTVIAYPCM 270
           TC+F  + + ++ KC     SS L      + L   H GH  ++T I   C+
Sbjct: 273 TCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCL 324


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 519 TTEHMLCYCATVDGSDHDPQN 581
           +T + LC C TV G  H P N
Sbjct: 124 STNNALCCCTTVHGHPHMPPN 144


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -1

Query: 225 MIVQQHFWSGSPEQPR*MSKLKTFSNVGSNNIKPTRPIGSDFVAVLSEINNRRSISSL*N 46
           M   + F   +P+       L    N+ +   +    +  DF    + INN +S  SL  
Sbjct: 258 MQYSKQFKLDNPDYEASSDSLNDIENLSTLTFRSDEELEFDFDT--NNINNNKSGDSLEM 315

Query: 45  LAYLPSDQEN 16
              +PSD+EN
Sbjct: 316 STTIPSDEEN 325


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 333 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPY 443
           L  + C T  SVP    P  +      NC    S PY
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY 458



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +3

Query: 333 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPY 443
           L  + C T  SVP    P  +      NC    S PY
Sbjct: 445 LATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPY 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,750
Number of Sequences: 5004
Number of extensions: 73501
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)