Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O05
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 34 0.16
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 31 1.5
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 29 3.5
02_01_0088 - 627825-628984,629339-629509,629612-630416 29 3.5
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 29 4.7
07_01_0240 - 1749674-1750514,1751157-1752040 29 6.2
05_03_0061 + 7912322-7912658,7914617-7914747,7914875-7914938,791... 29 6.2
06_03_0661 + 23225514-23227073 28 8.1
05_04_0130 - 18285430-18285951 28 8.1
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 28 8.1
03_02_0102 + 5637469-5639064 28 8.1
02_02_0101 - 6788090-6788356,6788770-6788940 28 8.1
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 33.9 bits (74), Expect = 0.16
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +3
Query: 252 NCVSVYECQALLAILNNQRRTQQDEKFLRDSQCGTKNSVPAVCCPC-NAADGQQGNCVNI 428
N S +E +AL N R Q FL S C NS+P CC + A +C N+
Sbjct: 632 NLASCHELEALPMSFGNLNRLQ----FLSLSDCYKLNSLPESCCQLHDLAHLDLSDCYNL 687
Query: 429 NSCPYVLQLLKNPNEANLNYVRGICLSRIRTTEHMLC 539
P + L + L Y+ S+++ LC
Sbjct: 688 GKLPDCIDQL-----SKLEYLNMTSCSKVQALPESLC 719
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 717 PGYESMDAGAPPTILSPTXMSRPQHFPSGLGGVAV 613
PG +S G P + SP R Q P G+G VA+
Sbjct: 690 PGVDSSTVGIKPLLRSPEEEDRKQSQPDGIGTVAL 724
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 417 CVNINSCPYVLQLLKNPNEANLNYVRGICLSRIRTTEHM 533
C+NI+ P +L++ N L +CL ++++T+ +
Sbjct: 390 CINIDPVPILLEVSNEANSTQLVNTNKLCLVKVKSTKDL 428
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 703 DGCGRTTNDFVSDGYVPAATLP-FRIRGGGSHLALAGVHPLRFWGSWS 563
D C T+ +DG+V +T P F + + L + G + L F G ++
Sbjct: 69 DKCSNNTDGTSTDGWVSTSTAPFFTLSSRANKLTVVGCNTLAFLGGYN 116
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 355 VPHWESLKNFSSCWVLL*LFNMARSAWHSY 266
+P W S+K CW++L FN A + +Y
Sbjct: 70 LPFWPSMKLIFICWLVLPYFNGAAFVYQNY 99
>07_01_0240 - 1749674-1750514,1751157-1752040
Length = 574
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 138 WNLHWKMFLIWTFIVAVLAIQTKSVVAQSCR 230
W LH L WT +V + AI T ++VA R
Sbjct: 66 WLLHTFCILQWTVLVQIAAINTITLVATDAR 96
>05_03_0061 +
7912322-7912658,7914617-7914747,7914875-7914938,
7915286-7915512,7915869-7916396,7916860-7916919
Length = 448
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 655 GHXRRRQNRWWCARIHRLV-SWAGGH 729
GH + + RWW A + ++V S AGGH
Sbjct: 78 GHGCQGEPRWWSAAMEKVVHSLAGGH 103
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 96 QQSPNLSDV*VLYYWNLHWKMFLIWTFIVAVLAIQTKSV-VAQSCRTPNGLNGNCVSVYE 272
QQS L V + Y++ + M+L+ + ++A++A+Q +V L N +SV
Sbjct: 28 QQSVRLKYVKLGYHYLISHGMYLLLSPLMALVAVQLSTVSPGDIADLWEQLRFNLLSVVA 87
Query: 273 CQALLAILN 299
C LL L+
Sbjct: 88 CSTLLVFLS 96
>05_04_0130 - 18285430-18285951
Length = 173
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 694 GRTTNDFVSDGYVPAATLPFRIRGG--GSHLALAGVHPLRFWGSWSLPSTVA 545
G T + V+ L F I G G+ LAGVH +R WG+ SL + A
Sbjct: 37 GETNHPGVAGNGATFYFLVFAILAGVVGAASKLAGVHHVRSWGAHSLAAGAA 88
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +3
Query: 258 VSVYECQALLAILNNQRRTQQDEKFLRDSQCGTKNSVPA-VCCPCNAADGQQGNCVNINS 434
+SV+ A L Q+ + +S C NS V C DG GN + N
Sbjct: 398 ISVHWAAANLTCQEAQKNHSRYACVSANSTCLGVNSTDGYVGYRCKCMDGFHGNPYDANG 457
Query: 435 CPYVLQLLKNPNEANLNYVRGICLSRIRTTEHMLC 539
C V + K P +GIC + I + + M C
Sbjct: 458 CEDVDECKKTP-----GIFKGICHNNIGSYQCMEC 487
>03_02_0102 + 5637469-5639064
Length = 531
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 348 IGSPSRTSHLAGFSSDYLIWPGVPGIHTRIRNY 250
IG P + HL + +P VP +T IRN+
Sbjct: 299 IGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNF 331
>02_02_0101 - 6788090-6788356,6788770-6788940
Length = 145
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 157 CF*FGHSSWLFWR--SRPKVLLHNHAGH 234
CF H+S++ WR SRPK++ + GH
Sbjct: 75 CFPVAHTSFMSWRDESRPKIVNNLRRGH 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,745,468
Number of Sequences: 37544
Number of extensions: 578164
Number of successful extensions: 1383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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