Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O04
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    30   0.36 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.4  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    27   4.5  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   5.9  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.8  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 350 DDLG--KRKTILSEDGGEIVTNDSFSMSITKATRGKIFNPD 466
           D +G  + K++ S  GG +V +DSF+ SI K +  +IF  D
Sbjct: 349 DQIGIMEMKSLASSTGGYLVLSDSFTTSIFKQSFQRIFGRD 389


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = -3

Query: 396 SPPSSDNIVLRFPKSSSCFITVLRFSLLPKSLHALPKSFSSETIKLLFFPSSSMAL 229
           S  SS +     P SSS FIT +  S    ++   P S SS T   +  PSS+ AL
Sbjct: 222 SSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEV--PSSTAAL 275


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
 Frame = +2

Query: 83  ILAAEETAMCDAGTGNSVPTEA---IKNNVIVIEKKPVKLCTGDISKNRIVSSAID--ED 247
           I  +E   +  +G  ++ P  A   I+N+ +  E K  +L     + N I     D  + 
Sbjct: 46  IFGSESQYISSSGQNSTNPFLADTRIENSPLGSESKANQLNKQGTNVNHIEIPLRDFNDP 105

Query: 248 GKNKSFIVSEENDFGSACNDFGNSEKRKTVMKQDDDLGKRKTILSE 385
            + +SF+   +N F S      N  K++    + +DLG R+ IL++
Sbjct: 106 TQPESFLPPPKNTFTSRIKKIKNLFKKEKKQVKPEDLGPRQIILND 151


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152 KNNVIVIEKKPVKLCTGDISKNRIVSSAIDEDGKNKSFIVSE-END 286
           + N + +E   +++C  ++  N      IDE   +K+ +V+E END
Sbjct: 213 EKNKLTLELTNLRICLHELQLNAEKGETIDESEDSKNTLVTEDEND 258


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 645 PNESTSPVGCLRKDVENNDRSLKYEDAKTIDDS 743
           PN S  PV    K    N++ LK E+    DDS
Sbjct: 473 PNASEEPVANGIKSEPENEKKLKTEETSKTDDS 505


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 335 VMKQDDDLGKRK--TILSEDGGEIVTNDSFSMSITKAT 442
           ++++ +DL   +  ++++EDG EI+T D    S  +AT
Sbjct: 348 ILEKRNDLNNEEPNSVVAEDGSEIITLDENDQSPNEAT 385


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 357 KSSSCFITVLRFSLL-PKSLHALPKSFSSETIKLLFFPSSSMALDTILFFEIS 202
           K  S F  V++  ++ PK+ H+L K+   + I L  F   S   ++I  FE S
Sbjct: 231 KGHSVFSLVVQQRIIDPKTRHSLKKASRLQIIDLASFSKGSQRNESISSFESS 283


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 273 ETIKLLFFPSSSMALDTILFFEISPVHSLTGFFSITITL 157
           ET  +L FP       +ILFF ++    L+G  +I +TL
Sbjct: 85  ETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,470
Number of Sequences: 5004
Number of extensions: 73560
Number of successful extensions: 262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)