Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O04
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 35 0.072
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 31 1.5
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 30 2.0
01_06_1206 - 35408965-35409155,35409453-35409708,35409828-35410433 30 2.0
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 3.6
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 3.6
08_01_0340 - 3008124-3009176 29 6.2
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 28 8.2
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 35.1 bits (77), Expect = 0.072
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 221 IVSSAIDEDGKNKSFIVSEENDFGSACNDFGNSEKRKTVMKQDDDLGKRKTILSEDG 391
IV +AID+D + S + ++END G AC+ GN K K++ D ++ SE G
Sbjct: 135 IVITAIDKD-REVSHVQTKENDGGVACSVDGNHGMEKDHTKEEKDESNKEMDDSEKG 190
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 690 ENNDRSLKYEDAKTIDDSFXMSITQAARGTIVH 788
EN +R YED + I D+F + I + G + H
Sbjct: 320 ENENRQFTYEDLEKITDNFQLIIGEGGSGRVYH 352
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/108 (24%), Positives = 49/108 (45%)
Frame = +2
Query: 101 TAMCDAGTGNSVPTEAIKNNVIVIEKKPVKLCTGDISKNRIVSSAIDEDGKNKSFIVSEE 280
TAM +G +PTE + + E + L S +DE+ N S+
Sbjct: 565 TAMEGSGHARILPTEYMVMLLDEEEDEDAMLLAAQFCMYSFSSMMLDENRNNISYSFYAR 624
Query: 281 NDFGSACNDFGNSEKRKTVMKQDDDLGKRKTILSEDGGEIVTNDSFSM 424
+ + FG++E+++ V+ +DD K K +L G +++ + FS+
Sbjct: 625 IEKIESLEPFGSTERKQIVLVDNDD-AKIKFVLW--GEQVLLANLFSV 669
>01_06_1206 - 35408965-35409155,35409453-35409708,35409828-35410433
Length = 350
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 104 AMCDAGTGNSVPTEAIKNNVIVIEKKPVKLCTGDISKNRIVSSAIDEDGKNKSF 265
++ D G N +PT A+ N+ P + TG S R+V ++E + K F
Sbjct: 38 SVLDTGNNNYIPTLAVGNHAPYGRNFPGRKPTGRFSNGRLVPDLLNEKLQLKEF 91
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 56 SITRAAPGIILAAEETAMCDAGTGNSVPTEAIKNNVIVIEKKPVKLCTGDISKNRIVSSA 235
SIT + PG + A++ A + P A + +V + P G +SKN + S A
Sbjct: 208 SITGSGPGGRIVAKDVEAAAAAPKKAAPVAAARPDVPLGSTVPFTTMQGAVSKNMVESLA 267
Query: 236 I 238
+
Sbjct: 268 V 268
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 203 DISKNRIVSSAIDEDGKNKSFIVSEENDFGSACNDFGNSEKRKTVMKQDDDLGKRKTILS 382
D +RI S A D DGK +S ++E D C+D + TV + G K+
Sbjct: 275 DFGLSRINSDA-DADGKPESGAIAEGCDVDGGCDDDASVIAESTVTTTVNGEGNPKSPED 333
Query: 383 EDG 391
+DG
Sbjct: 334 DDG 336
>08_01_0340 - 3008124-3009176
Length = 350
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +2
Query: 227 SSAIDEDGKNKSFIVSEENDFGSACNDFGNSEKRKTVMKQDDDLGKRKTILSEDGGEIVT 406
S+ + G ++ + ++ GS + + R+++ K+D D ++L EDG E T
Sbjct: 264 SNMLHNPGNSREPSSTSQSTNGSLHKEDADENTRESLHKEDVDDNTAGSLLKEDGYESAT 323
Query: 407 NDSFSMSITKATRGKIFNPD 466
+ + G + N D
Sbjct: 324 GSFDKEDTEEDSNGSLHNGD 343
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 125 GNSVPTEAIKNNVIVIEKKPVKLCTGDISKNRIVSSAIDEDG 250
G + + N+ + ++K P+K TG ++ V SAI DG
Sbjct: 297 GAYIAASCMDNSALHMDKGPIKAYTGSKIESFFVKSAISPDG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,579,455
Number of Sequences: 37544
Number of extensions: 416298
Number of successful extensions: 1198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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