Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_O04
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 31 0.79
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 29 4.2
U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical p... 28 7.3
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 9.7
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 9.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 9.7
U00052-6|AAK21424.1| 156|Caenorhabditis elegans Hypothetical pr... 28 9.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 9.7
AL132858-7|CAB60485.1| 107|Caenorhabditis elegans Hypothetical ... 28 9.7
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 28 9.7
AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical... 28 9.7
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 206 ISKNRIVSSAIDEDGKNKSFIVSEENDFGSACNDF-GNSEKRKTVMKQDDDLGKRKTILS 382
+SK+ I + AIDE+ F+ SE+ C D+ GN+E+R M + +G +++
Sbjct: 2151 VSKSSISAIAIDENRSRLCFVDSEK--AAVDCVDYNGNNEQRNVAMFKAQPMGDIVSLVF 2208
Query: 383 EDGGEIVTNDSFSMS 427
+G E+ D F+ S
Sbjct: 2209 -NGDEMYFFDKFNSS 2222
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 368 KTILSEDGGEIVTNDSFSMSITKATRGKIFNPD 466
K + + GG +V DSF+ S+ K T + F+ D
Sbjct: 418 KNMFNSSGGHVVMGDSFNSSLFKQTYQRSFDKD 450
>U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical
protein C44B7.12 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 324 FSLLPK-SLHA-LPKSFSSETIKLLFFPSSSMALDTILFFEISPVHSLTGFF 175
F +PK LHA L S S ETIKL+ + A + + +++ ++TG F
Sbjct: 56 FKNMPKVELHAHLSGSLSPETIKLIMESDETRAEEIMKKYKLEKPENMTGVF 107
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 302 NDFGNSEKRKTVMKQDDDLGKRKTILSEDGGEI 400
ND+ N EKR T +GK K+ ED E+
Sbjct: 325 NDYVNKEKRSTTSSAWQQIGKNKSENEEDDMEL 357
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 380 SEDGGEIVTNDSFSMSITKATRGKIFNPDRRTVVFDDSWN 499
++ G VT+D +I K GK PD +T+ DDS N
Sbjct: 7867 TDASGSFVTDDG--QAIGKDDEGKPIGPDGQTLPIDDSGN 7904
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 380 SEDGGEIVTNDSFSMSITKATRGKIFNPDRRTVVFDDSWN 499
++ G VT+D +I K GK PD +T+ DDS N
Sbjct: 7912 TDASGSFVTDDG--QAIGKDDEGKPIGPDGQTLPIDDSGN 7949
>U00052-6|AAK21424.1| 156|Caenorhabditis elegans Hypothetical
protein K02F3.9 protein.
Length = 156
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 778 VPRAA*VIDMXNESSIVXASSYFKLLSLFSTSLRRQPTGEVLSLGXE 638
VP+A + D + + SS FK+LS F + ++ + E+ S G +
Sbjct: 85 VPKATKLFDAAAKKYNIDPSSAFKMLSTFFETFKKGASSEMASKGLQ 131
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 380 SEDGGEIVTNDSFSMSITKATRGKIFNPDRRTVVFDDSWN 499
++ G VT+D +I K GK PD +T+ DDS N
Sbjct: 7912 TDASGSFVTDDG--QAIGKDDEGKPIGPDGQTLPIDDSGN 7949
>AL132858-7|CAB60485.1| 107|Caenorhabditis elegans Hypothetical
protein Y113G7A.13 protein.
Length = 107
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 609 IVSEIMNXNRSXPNESTSPVGCLRKDVENNDRSLKYEDAKTIDDSFXMSITQAARGTIV 785
I +E+M PNE+ P R+DV N+ K T+D+ +S + G ++
Sbjct: 41 IRNELMRGQLGEPNENNRPPPVDRRDVPENNELGKLPVHSTLDNLSTLSPEPVSTGILL 99
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 176 KKPVKLCTGDISKNRIVSSAIDEDGKNKS 262
KKPVK+ G++ K RIV + GKN S
Sbjct: 1690 KKPVKVTAGEVYKLRIVMERVG-PGKNNS 1717
>AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical
protein Y37D8A.22 protein.
Length = 458
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 309 KSLHALPKSFSSETIKLLFFPSSSMALDTILFFEISPVHSL 187
K+LH P S ++ L + S M ILFF +S V+SL
Sbjct: 362 KALHKTPGEHSEQSTSYLAWGLSLMVTFMILFFFLSIVNSL 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,829
Number of Sequences: 27780
Number of extensions: 407399
Number of successful extensions: 1377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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