Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O04
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.67 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.2  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 55  VNNQSSTRHNTRCRGDSNVRCR 120
           +NNQ+STR   R     NV CR
Sbjct: 694 INNQTSTREYPRIMDLDNVMCR 715


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 362 KRKTILSEDGGEIVTNDSFSMSITKATRGKIFNPDRRTVVFDDSWNLSVTQ 514
           K+ + +++  GE++TN+          RGK ++   RT +FD  +N S  Q
Sbjct: 517 KKGSFVTQYVGEVITNEEAEK------RGKEYDAAGRTYLFDLDYNESEEQ 561


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 342 FITVLRFSLLPKSLHALPKSFSSETIKLLFFPSSSMA 232
           F+T+LR++ +P SL+ + K        L  +P  S A
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSFA 113


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 342 FITVLRFSLLPKSLHALPKSFSSETIKLLFFPSSSMA 232
           F+T+LR++ +P SL+ + K        L  +P  S A
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSFA 113


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 342 FITVLRFSLLPKSLHALPKSFSSETIKLLFFPSSSMA 232
           F+T+LR++ +P SL+ + K        L  +P  S A
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSFA 113


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 349 ILFHYGFTLFTVTKIITRTSEIIFFR 272
           +LFH   TL T+   +TR +   FFR
Sbjct: 323 LLFHALITLPTIFWFLTRQNPAAFFR 348


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 IVSSAIDEDGKNKSFIVSEENDFGS 295
           + +  +++ GKN + +   E D GS
Sbjct: 568 VAAERLNKIGKNPNLVAHREEDLGS 592


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 IVSSAIDEDGKNKSFIVSEENDFGS 295
           + +  +++ GKN + +   E D GS
Sbjct: 536 VAAERLNKIGKNPNLVAHREEDLGS 560


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 517 RLGHRQIPRIIKHYRPPVRVKYFPSSRFRY 428
           RLGH  I +   HY  P    Y    R +Y
Sbjct: 585 RLGHMSINQAAIHYNLPYSSLYGRFKRGKY 614


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 670 PTGEVLSLGXERF 632
           P G+V+++G ERF
Sbjct: 18  PDGQVITIGNERF 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,834
Number of Sequences: 438
Number of extensions: 5235
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)