Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_O01
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398     31   1.2  
04_04_0063 - 22441549-22442961                                         30   2.1  
04_01_0154 - 1775693-1775942,1776834-1777588                           30   2.1  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   3.7  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     29   4.9  

>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
          Length = 187

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -1

Query: 447 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 304
           V+T  SA   S +S A  AAAA G  T  + +    SA+ GNAAS  A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 444 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTNSN 271
           +T  +AT  S  + A+TA+ A         S+R VS+AKG   AAS + T   +  T S+
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369

Query: 270 SSVSAAD 250
              S  +
Sbjct: 370 RRYSIGE 376


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 396 TAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRA 238
           TAA   G +T    S RR    +GN A R ++ G++      ++V     GRA
Sbjct: 126 TAARQDGGATRRNSSRRRRPRWRGNVARRSSSAGTQRRLTGQTAVGDGGEGRA 178


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 447 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 304
           ++T ++ATE  + +E   AAA +  +T       + + AK  AA RKA
Sbjct: 1   MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 462 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 304
           KRST+ S+  S+ +      A  AAA    STT T +    S+A   AA+  A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,035
Number of Sequences: 37544
Number of extensions: 220062
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)