Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N24
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   4.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   5.9  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
 Frame = +3

Query: 570 VLVPXPXPXEXHVPYPVXV---XXPXPXPXGXXXXPPXXXXXPXXXPSPXXXXGXXRXXX 740
           V+VP P P    VP P  +     P P P G     P     P   P P    G  R   
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP----PPPPPPPPAVSAGGSRYYA 794

Query: 741 XRPXGXP 761
             P   P
Sbjct: 795 PAPQAEP 801



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 579 PXPXPXEXHVPYPVXVXXPXPXPXGXXXXPPXXXXXP 689
           P P P    VP P     P P P      PP     P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 131 QLCFLSSSSHWQPLLLPAGKLSRA 60
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 314 PRPSPSSKASLVPYAVDRPVPYPVEKHVPYPVKV 415
           P PS S+ +S+ P A    V   V  + PYP ++
Sbjct: 216 PPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEI 249


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 160 VVSXNLGYGYGIDGLDVGYIG--HGQGLGGAYNYVDGGYSSGYG 285
           + S +   G G D + +  +   HG+GL   YN++    +SG G
Sbjct: 270 IASNSESCGIGCDNMTICIVAFLHGRGLEDWYNWITQRVNSGEG 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,742
Number of Sequences: 5004
Number of extensions: 35582
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)