Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_N23
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.024
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.69
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 680 PPPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPPXYXTPX*PPSSPXXRP 835
PPPPP P P P P P P PP PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.69
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +3
Query: 723 SXPLPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPT-XPXXXPSPXXSXSXXSPXAP 899
S P P L D Q+ + P PPPP PT P P P + P P
Sbjct: 708 SSPSPLLPDVSDTVEEQQKLLLKSPP---PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Query: 900 SPXP 911
P P
Sbjct: 765 PPPP 768
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/66 (24%), Positives = 19/66 (28%)
Frame = +3
Query: 714 PXXSXPLPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPSPXXSXSXXSPX 893
P P + P P P P PPPP P P P + S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 894 APSPXP 911
+P P
Sbjct: 792 YYAPAP 797
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.23
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -3
Query: 834 GRXXGEEGGXXGVXXXGGXGAXGXXXXGGXGXXGVGXMXXXXGXXGVGGGGGXXXGGECG 655
G G GG G GG G G G G G G G GG G GG G
Sbjct: 9 GGRGGSRGGRGG--FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 714 PXXSXPL-PRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPSPXXSXSXXSP 890
P + P+ P+ PP P P + PP PP P P P P + S +P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP--PSAPPPPLPASS--AP 1741
Query: 891 XAPSP 905
P+P
Sbjct: 1742 SVPNP 1746
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 686 PPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPPXYXTPX*PPSSP 823
P TP P P PP P P P PPS+P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +2
Query: 680 PPPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPP 787
PP P P P P P P AP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.69
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 786 PXTXPPXDPPPPXXXXPTXPXXXPSP 863
P PP PPPP P+ P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = +3
Query: 729 PLPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPS---PXXSXSXXSPXAP 899
P+P P P P P PP P P PS P S +P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 900 SP 905
+P
Sbjct: 1173 AP 1174
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 680 PPPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPPXYXTPX*PPS 817
PPP P P P+ P P P P P P PS
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +2
Query: 683 PPPPTPXXPXXXXIXPTPXXPX-PPXXXXPXAPXPPXYXTPX*PPSSPXXRP 835
PP P P P P PP P P P P PPS+ P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Frame = +3
Query: 714 PXXSXPLPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPS---PXXSXSXX 884
P + P L P P P D PP P P+ P S
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058
Query: 885 SPXAPSPXP 911
+P AP P P
Sbjct: 1059 APSAPPPVP 1067
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 683 PPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPPXYXTPX*PPSSP 823
PP P+ P + P P P P P AP P P PP P
Sbjct: 158 PPIPSKAPPIPSSLPP-PAQPAAPVKSPPSAPSLPSAVPPM-PPKVP 202
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 680 PPPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPPXYXTPX*PPSSPXXRP 835
PPP P P P P PP P AP P P + P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPP--AQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = +2
Query: 680 PPPPPTPXXPXXXXIXPTPXXPXPPXXXXPXAPXPP-XYXTPX*PPSSP 823
PP P P P PT P P A PP P P S P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +3
Query: 729 PLPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPSPXXSXSXXS--PXAPS 902
P P+ P P R P P PP P P P P P + P APS
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIP-SKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = +3
Query: 732 LPRLXXPPDXXXPQRXXXPXTXPPXDPPPPXXXXPTXPXXXPSPXXSXSXXSPXAPSP 905
LP PP P PPPP P+ P S + +P AP P
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 119 NVTT*LRAGKKRI*MDPLLDASL 187
NV T L K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,935
Number of Sequences: 5004
Number of extensions: 43253
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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