Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N20
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    29   0.64 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   5.9  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   7.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   7.8  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   7.8  

>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 309 MDSTHVLHTKQ---STRPISKQEIEFLSPGQRVTGNLKTMRALVNSSSTF 449
           MDS++ L+  Q     RP+ +  IE + P Q +T  +K  +   NSSS F
Sbjct: 19  MDSSNALYRVQRPLQRRPLQELSIELVKPSQTIT--VKKSKKSTNSSSYF 66


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 273 TASICSKETSVMMDSTHVLHTKQSTRPI---SKQEIEFLSPGQRVTGNLKTMRALVNSSS 443
           T ++ S  +S + D  H +  K  + P    S + +    P +  +    T R LV + S
Sbjct: 653 TKTVTSANSSNIRDMEHTISDKPRSEPDAIPSSKSMHSNKPFEEKSEKPTTKR-LVTNPS 711

Query: 444 TFQ*IWHADTVSRTKRLRK 500
                WH++ + R + LRK
Sbjct: 712 NVNASWHSNMLKRQEDLRK 730


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 327 LHTKQSTRPISKQEIEFLSPGQRVTGNLKTMRALVNSSSTFQ*IWHADTVSRTKR 491
           +H+++ +    K    FL   +  + +L +M+   +SSS+    WH DT +  K+
Sbjct: 342 IHSREPSSLSRKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSWHGDTENSVKQ 396


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 312 PS*PKFPLSRLML*SYAELRPGPVRYSAQSLSSPP---TASGDSADTHTQHNA 163
           PS P  P SR  + +  ++ P PVR +  S   PP   ++SG  + T+ Q NA
Sbjct: 120 PSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTY-QSNA 171


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 379 KNSISCFEIGLVDCFVCNTCVLSIITEVSFEQIDAVIVCRAATGPGEIQR 230
           KNSIS      V+C+  +   +S I  ++ E+  +VIVC +    G++ R
Sbjct: 364 KNSIS--SESSVECYTADNLTISEILRLAKEKNSSVIVCGSLYLLGDMYR 411


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 504 CLSSILPE--RLSERFALLCSRTWNAGLANTEDLTDSAITLSILL 632
           CL  ++ +  +L E   +    TW + L +T+D+   A+T +I+L
Sbjct: 9   CLEQLITDDLKLVEHQEVSNGATWASALQSTKDVPSHALTKTIVL 53


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 561 RTWNAGLANTEDLTDSAITLSILLGVPEFAFPEVNWSPCSLTA 689
           R +   +  TED+ +   T   L  V +F  P +  +P SLTA
Sbjct: 220 RIYKTFVNQTEDIINYLSTARSLEFVTKFPVPNIKHAPISLTA 262


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 13  YHGAPSTGRAHCNGHH 60
           Y   PST  AH N HH
Sbjct: 120 YSEGPSTANAHANAHH 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,305
Number of Sequences: 5004
Number of extensions: 70076
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)