Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N18
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    29   0.63 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   5.8  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   5.8  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   7.7  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   7.7  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 287 NRQQSSSPGVRN--RFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTI 451
           N  + S P V++  + P  + + +NESG     D    ++    V   QPQ +I T+
Sbjct: 588 NASEESYPNVKHISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTV 644


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 220 PFRSGRAVLVRDRPWEVT*LITQSMQ 143
           PF+S    +++D PW +T  + Q++Q
Sbjct: 466 PFKSNIFYVLKDVPWSITKYLPQALQ 491


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 257 EKSSGXARVANRQQSSSPGVRNRFPSTSSTDENESGT 367
           E   G + +  +  SSS    N FPS+S+ D  E  T
Sbjct: 20  EHPIGLSSILKQDSSSSSDSPNFFPSSSTNDHQERDT 56


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 299 SSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQ 433
           SS P V  + PS++   +  +G+D + +  +R  ++  +  + P+
Sbjct: 297 SSPPSVPQKIPSSNHKSQQANGSD-QGNEGKRMALIQQLLALTPE 340


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 235 VGVGMPFRSGRAVLVRDRPWEVT*LITQSMQTLCLGSGPLTTTV 104
           VG+    R+G+ VLV D  +E    +  S+  +  G GP+T  +
Sbjct: 263 VGINAVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAM 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,046
Number of Sequences: 5004
Number of extensions: 56683
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)