Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N17
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 667 YPHHPHNPXSTLTVLSWSTMKPSMTSAAVISTLSAQ 774
           +PH P  P +T+T ++ +T   + T+    +  + Q
Sbjct: 647 HPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQ 682



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 676 HPHNPXSTLTVLSWSTMKPSMTSAAVISTLSAQPT 780
           HPH P +  T ++  T   + T+    +T +   T
Sbjct: 647 HPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTT 681


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 170 PSRHYRSGLR 141
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 233 RWSCLWASGHQAGCRAPGSKAPSRHYR 153
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 233 RWSCLWASGHQAGCRAPGSKAPSRHYR 153
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 233 RWSCLWASGHQAGCRAPGSKAPSRHYR 153
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 135 PTCTEMHSRILIRVFFLCLNV 73
           P+  + +SRI+  V F+C N+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 135 PTCTEMHSRILIRVFFLCLNV 73
           P+  + +SRI+  V F+C N+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 135 PTCTEMHSRILIRVFFLCLNV 73
           P+  + +SRI+  V F+C N+
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNL 359


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 204 MARCPQTRPSGVETILSTLSSARPE 278
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,534
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)