Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N12
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.9  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   5.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   7.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   7.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 604 ELPAAHPMDLPLIHQGGPFRGQTCQGLRIHQPWSQRD 494
           E  A +P    ++         T Q LR+HQPWS+ D
Sbjct: 6   EWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSKID 42


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 FDQRNKFHKVDKSGDIVFIYCASSDGRW*EGLC 212
           ++ RN      K GD  F+YC++      +GLC
Sbjct: 52  YEARNMIRDEIKIGDYAFLYCSNCKFPHIKGLC 84


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 685 LQDHL-H*TAAEGPFAQAPILAPGAWGPELPAAHPMDLPLIHQGG 554
           L  H+ H + A   FA   +LA G+ G  L + + MDL +   GG
Sbjct: 419 LDPHVSHASIASSKFAPGILLASGSVGDRLLSENQMDLFVSEDGG 463


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 370 DIKVLFESAGRNIHDGLRLVNRAMADEPPNKRPKMIRDPFQGPSD 504
           D+  L+ES    I D L    RA   +P N   K      +GP++
Sbjct: 657 DLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARLQLLRGPNN 701


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 572  WEVHGVSSREFRAPSPRRKDWGLGKWPLSS 661
            W       RE  AP      WGLG+W L S
Sbjct: 1348 WVTSEQEHREAIAPLAAAAAWGLGQWNLIS 1377


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 592 QPGVPGPKPPAQGLGPGQMAPQQQFNGDDP 681
           +P  P PK     LGP Q      F G+ P
Sbjct: 358 RPTAPKPKFKQDSLGPNQARAMYSFAGEQP 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,625
Number of Sequences: 5004
Number of extensions: 75150
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)