Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N08
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...   147   2e-36
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    30   0.47 
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             27   3.3  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   3.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   4.4  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score =  147 bits (356), Expect = 2e-36
 Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
 Frame = +2

Query: 179 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 358
           R+F NL  +   R+  ALA G++    EIL      I+  ++ S LRGRG  GFPTG K 
Sbjct: 33  RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92

Query: 359 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 523
             + K +    GR +   ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A 
Sbjct: 93  LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152

Query: 524 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIE 703
           Y++IR ++Y E   +Q  I +AY   L+GKN  G+    ++ +H GAG+YI GEE+ALI+
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212

Query: 704 SIEGKQGXP 730
           S++G+   P
Sbjct: 213 SLQGEFPVP 221


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 480 STSLWGS*RIISLSLQVPGSPSSAFTTRYFGRPSDGLFMNDHFIPV 343
           S   W +      SL     P   FTTR+F RPS G    + F+ V
Sbjct: 253 SDDSWKAPESWGTSLPTEAIPKQVFTTRFFARPSLGNRKKEFFLRV 298


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 115 RYIVDINCQRPNNAQMWFCALN 50
           R +VD++C+R +N   WF A+N
Sbjct: 133 RLVVDVSCRRKDN--RWFAAIN 152


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 572 LANCLLHCRIHL*CKCMLLVHPWLGQQLDILPPVCG 465
           L N +L+  I+   K + +V+ W+G  +  +PP+ G
Sbjct: 194 LGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMG 229


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 336 PAPPLPRRPDVFISLTIQSVP 274
           PAP  P +P++FIS  +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 250  IPVPSGESTLQPPFMSTIQ 194
            +P P+   TL PP +ST+Q
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQ 1199


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 444 LSLQVPGSPSSAFTTRY-FGRPSDGLFMNDHFIPVGKPAPPLPRRPDV 304
           L + +PGS  +  T ++    P  G++    F P+   APP+P  P+V
Sbjct: 274 LRVSIPGSQPALVTPKHKMNVPPMGMYPLP-FSPLPSAAPPIPFSPNV 320


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 79  YWAFGN*CQQCTGALPADPGAFKRQVWT 162
           YW+ G  C +C    P   G+  ++ WT
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWT 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,353
Number of Sequences: 5004
Number of extensions: 79397
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)