Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_N08
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical pr... 370 e-103
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 29 5.5
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 29 5.5
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 28 9.5
U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical pr... 28 9.5
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 28 9.5
>Z50109-8|CAA90435.1| 479|Caenorhabditis elegans Hypothetical
protein C09H10.3 protein.
Length = 479
Score = 370 bits (910), Expect = e-103
Identities = 172/241 (71%), Positives = 199/241 (82%)
Frame = +2
Query: 29 LGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRH 208
LGA R+I P + + G + + N + +Q K +G L DSDR+FTNLYGRH
Sbjct: 8 LGA--RLIGQNVPKVAVRG-VVTSAQNANAQVKQ----EKTSFGNLKDSDRIFTNLYGRH 60
Query: 209 EWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR 388
++RLKGA+ARGDW+ TKEI+LKG+DWI+ E+KTSGLRGRGGAGFP+GMKW FMNKP DGR
Sbjct: 61 DYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFPSGMKWGFMNKPFDGR 120
Query: 389 PKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNL 568
PKYLVVNADEGEPGTCKDREIMRHDPHKL+EGCLI G AMGA+AAYIYIRGEFYNEA L
Sbjct: 121 PKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAAYIYIRGEFYNEACIL 180
Query: 569 QVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGXPRLXPPF 748
Q AI EAY+AG +GK+ G+GY+FD+FVHRGAGAYICGEETALIES+EGKQG PRL PPF
Sbjct: 181 QEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIESLEGKQGKPRLKPPF 240
Query: 749 P 751
P
Sbjct: 241 P 241
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 712 GQTRQXEAQXSFPADVGLXGCP-PLSTMXNDRGXXTICXXXG 834
G+ + + FPAD+GL GCP ++ + TIC G
Sbjct: 229 GKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGG 270
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 351 IPVGKPAPPLPRRPDVFISLTIQSVPFSKIS 259
IP+ P PPLPR P L S+P+++I+
Sbjct: 492 IPMSSPPPPLPRTPQPNNGLPNASLPYNQIN 522
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 443 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 583
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 563 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 609
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 443 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 583
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 591 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 637
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 443 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 583
+E M H+P L+EG L R +G+ RG + Q A+A
Sbjct: 563 KETMVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVA 609
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 83 GPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRVF 187
GP ++V+N+P RF+ + +K+G ++D + +F
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIF 186
>U37430-2|AAL08045.2| 802|Caenorhabditis elegans Hypothetical
protein K09F5.6 protein.
Length = 802
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 293 NEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD 442
+E K SG+ G G G ++W + + G+P L+ N G K+
Sbjct: 751 SENKGSGIYGTSGIGSGNNVQWGGAQRAAPGQPGQLLWNPPGATNGHNKE 800
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 83 GPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRVF 187
GP ++V+N+P RF+ + +K+G ++D + +F
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIF 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,095
Number of Sequences: 27780
Number of extensions: 480397
Number of successful extensions: 1261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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