Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N08
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 432 LVKTGRLCVTTPTNWWKDV*LLAE 503
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 432 LVKTGRLCVTTPTNWWKDV*LLAE 503
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 432 LVKTGRLCVTTPTNWWKDV*LLAE 503
           L   G+L      +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 RPKYLVVN-ADEGEPGTCKDREIMRHD 463
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 RPKYLVVN-ADEGEPGTCKDREIMRHD 463
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 RPKYLVVN-ADEGEPGTCKDREIMRHD 463
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 RPKYLVVN-ADEGEPGTCKDREIMRHD 463
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 RPKYLVVN-ADEGEPGTCKDREIMRHD 463
           +P  L+ N ADEG  GT +   ++ HD
Sbjct: 70  KPDILMYNSADEGFDGTYQTSVVVTHD 96


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 662 HRGVRIYQSHNQNH 621
           HR + IYQSH+  H
Sbjct: 64  HRDLPIYQSHHHLH 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,709
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)