Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N06
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   5.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 696 TPAPTQPSKPEVYFIKYQTQ 755
           TPAP +P KPE+ FI Y  Q
Sbjct: 254 TPAPLEPDKPEL-FISYIVQ 272


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -3

Query: 443  STRISATESSITSEAQTAAAAKGESTTET-----ESIRRVSAAKGNAASRKAT*GSRMTT 279
            ST  SAT SS +S A  + +    S+  T      S   ++AA    +S  +   + +T 
Sbjct: 965  STAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTD 1024

Query: 278  NSNSSVSAA 252
            +S SSV+ A
Sbjct: 1025 SSTSSVATA 1033


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 644 ECLLFVLWLDRNYGGSRSGRSWGLDEDDLVMFLGWSHSRDTRKSLLN 504
           EC +FVL L ++ G    GRS      DL   L + H   + K L N
Sbjct: 5   ECTVFVLDLGKDMGTCHHGRS----HSDLEWTLSYFHDELSHKFLAN 47


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 482 SRTSPRTS*AKTSSYPCCGSTPETLQDHLHQGPNSSH 592
           SRTS   S   TSSYP       + + HL+  P + H
Sbjct: 811 SRTSTPFS-ESTSSYPLVSGNLSSCETHLNGSPQNGH 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,383
Number of Sequences: 5004
Number of extensions: 44744
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)