Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_N04
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.4  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.5  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    26   5.8  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   5.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   5.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   7.7  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   7.7  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 285 AIDLLTNDECRLLLEVEDFFN 347
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 418 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 507
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 528 LEEKVDLPSIFENISEVPERVDPQPPGSGSSFKSFCDLA 644
           LEE + + S  EN+ +V E       G GS+   F D A
Sbjct: 73  LEENIPVNSAMENLRKVEETAGSFWSGFGSTVNGFLDQA 111


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 532 RKKLTSLRSSKTFLKFLNAWTHNPRAAVLASSPFVTSQPTEELLREFETVYGAVEL 699
           R  +T  + SKTFLK L+A+        + SS         ELL++ ETV+  ++L
Sbjct: 459 RPDITETKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKD-ETVFSPLKL 513


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 391 RSKSITPRVSTRH--HRRS*NQVPPNSLTIFCSS*TVNANKRIFSPTG*RKKLTSLRSSK 564
           R  +  PRV+  +  + +  N +  N+     ++ T+N ++R+ +P+G R     L  S 
Sbjct: 529 RGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSP 588

Query: 565 TFLKFLNAWTHNPRAAVLASS 627
                LN   H  R ++ + S
Sbjct: 589 ASYDSLNVPKHRRRQSLFSPS 609


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 641 RSPLKNCCGNSKRFMVLSSYAFNTAAE 721
           R+   N C N   F  LS+Y+ N  A+
Sbjct: 396 RAKFNNLCSNILHFRALSAYSLNLTAD 422


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 155 QDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEGVMGCGHRF 295
           +D   H  K      I+P  LLF F E NH +++     ++  G ++
Sbjct: 345 EDSCFHKIKAAQWHQISPRSLLFQFQEQNHIHHKKIRRKLLAAGWKW 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,112
Number of Sequences: 5004
Number of extensions: 63836
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)