Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M21
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 31 0.28
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 2.6
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 4.5
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 4.5
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 27 4.5
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 6.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 6.0
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 7.9
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 7.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 7.9
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 139 SSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEIL 318
S DY YE Y ++ A + E ++++ +PD VK F + F E+L
Sbjct: 430 SGSDYT---YEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGYWPAFSFYDELL 486
Query: 319 NLYENTFPTLTEKYFENTP 375
L N +P K + +TP
Sbjct: 487 KLLRNKYP----KVYSSTP 501
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 373 PWPDEDEVSPIVDND---NVFMILYKELYYRDIYARVPGGPKPEQRFHSFYNY 522
P+P + + P V N N F + D Y+R+P GP P++ +SF+++
Sbjct: 3 PFPLKSFIPPQVANPTALNAFPSSARMGRIVDFYSRLPHGPAPKKSSNSFFSW 55
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 196 STEHYEPEYDRSSYYKMPDMVKKFL---VYFRNMINEGVTYEILNLYENTFPTLTEKYFE 366
S E + + + + + D+V + + V I+ G YE++NL ++ +T+ +
Sbjct: 397 SNEIQKQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLRRVTKLFQL 456
Query: 367 NTPWPDEDEVSPIVD 411
PW D+ +D
Sbjct: 457 KEPWKLSDDSQEKID 471
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 208 YEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTY 309
+E YD S + DM KK L+ FRN +G+ Y
Sbjct: 327 FEDAYDIISKLSVSDMKKKLLIRFRN--EDGLDY 358
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -1
Query: 256 PCQAFYNKKTCHIPARSVLWTVLHSRHRIRNLPHYNRRWNTWLLIE 119
PC+A N CHI R+ W R P Y NT L IE
Sbjct: 59 PCKAVLNPY-CHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIE 103
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 205 VLWTVLHSRHRIRNLPHYNRRWN 137
+L H+R I +LPH+ RRW+
Sbjct: 407 ILQLATHNRSFICSLPHFLRRWS 429
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 291 NHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAIGFVTSLIIIVAGIHG 130
NH + KEFL+H ++ + R + LV F ++ VT + + I G
Sbjct: 14 NHFSDDQKEFLNHAKYRVKRNTIFGMLVGFSLPLYLARNKKVTPIRLYATSIIG 67
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 184 YEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYF 363
++ E+Y Y +S + P + + +R + G + L+ ++ L
Sbjct: 374 FDVWDREYYTARYKQSLINQKPSL-NPSITNYRRFFSVGTVIQGLSRLFSSLYGLRFVPA 432
Query: 364 ENTP---W-PDEDEVSPIVDNDNVFMILYKELYYR 456
+ +P W PD ++V+ +ND+V ++Y +L+ R
Sbjct: 433 DISPGEVWHPDVNKVNVYNENDHVMGVIYFDLFAR 467
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 283 NMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVD 411
+MI+ + + LNL +T LT ++E + + D+D V+ +++
Sbjct: 795 SMISANLMNDSLNLKVSTIFALTRIFYEFSDYIDDDYVNAVLE 837
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 133 MYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSY 237
M+ +D + GG + D++++ + Y P D SY
Sbjct: 19 MFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSY 53
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 358 YFENTPWPDEDEVSPIVDNDNVFM 429
YF++ W D+D +SP + N+ M
Sbjct: 451 YFKDDSWMDDDYISPCMTTYNLTM 474
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +1
Query: 202 EHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWP 381
+ Y +Y ++ Y + F+V F+++ + +LN N F L ++ E+ P
Sbjct: 50 DRYTMQYQEATQYSIV-----FVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQVP 104
Query: 382 DEDEVSPI 405
+E EV +
Sbjct: 105 NEAEVEKL 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,822
Number of Sequences: 5004
Number of extensions: 59875
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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