Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M21
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 134 9e-32
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 134 1e-31
09_06_0240 + 21797458-21799369,21799636-21799784 31 0.89
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 29 3.6
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 4.8
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 29 6.3
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 29 6.3
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 134 bits (324), Expect = 9e-32
Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 6/144 (4%)
Frame = +1
Query: 244 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNV 423
+PD VK F+ + + + YEI +YE F L+++ F + PWP + VSP D D+V
Sbjct: 22 VPDSVKTFVAHMYRHVRDKNVYEIHQMYEGGFQRLSDRLFRDAPWPAAEAVSPYCDGDHV 81
Query: 424 FMILYKELYYRDIYARVPGGPKPE------QRFHSFYNYCDLFNYILSVTPVPLELPDQW 585
F++LY+EL+YR YAR QR S+ NYCDLF+ +L V ++LP+QW
Sbjct: 82 FLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESWANYCDLFSVVLHGV-VNMQLPNQW 140
Query: 586 LWELIDEFVYQFQSXAQYRSRTQS 657
LW+++DEFVYQFQS QYR++ ++
Sbjct: 141 LWDMVDEFVYQFQSFCQYRAKLKN 164
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 134 bits (323), Expect = 1e-31
Identities = 60/138 (43%), Positives = 92/138 (66%)
Frame = +1
Query: 244 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNV 423
+PD VK F+ + I + YE +YE F L++++F +TPWP + V+ D D+V
Sbjct: 9 VPDSVKTFVSHLYRHIRDRNVYETHQMYEGGFTRLSDRHFRDTPWPPAEAVAAHCDGDHV 68
Query: 424 FMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELID 603
F++LY+EL++R +ARV G P QR S+ NYC LF+ +L V ++LP+QWLW+++D
Sbjct: 69 FLLLYRELWFRHAHARVQ-GLTPAQRAESWDNYCSLFSVVLQGV-VNMQLPNQWLWDMVD 126
Query: 604 EFVYQFQSXAQYRSRTQS 657
EFVYQFQS QYR++ ++
Sbjct: 127 EFVYQFQSFCQYRAKLKN 144
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/91 (24%), Positives = 41/91 (45%)
Frame = +1
Query: 145 DDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNL 324
DD N G E + + ST + DRS+ + D + +F F+N + + E L+L
Sbjct: 318 DDTNSGPLERNVNSDNGSTRSNRQDEDRSTVTCIDDWIVQFARLFKNHVGVS-SDEYLDL 376
Query: 325 YENTFPTLTEKYFENTPWPDEDEVSPIVDND 417
+E + TE + + EV + +++
Sbjct: 377 HEVSMKLYTEAIEDTITTEEAQEVFQLAESN 407
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 256 PCQAFYNKKT-----CHIPARSVLWTVLHSRHRIRNLPHYNRR 143
PC AF+ K T CH ++ WT + + +NLP NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 351 SECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFII 235
S G+ + +VQD IC+ NH K ++ F D + +I
Sbjct: 419 SSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLI 457
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 184 YEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRN-MINEGVTY--EILNLYENTFPTLTE 354
Y + YEPE Y+M L++ ++ G Y EI +EN FP LTE
Sbjct: 157 YSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTE 216
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 127 TTMYSSDDYNEGG---YESYGDYEAQSTEHYEPEYDRS 231
+T S YN+ G Y S G Y ST++YE Y++S
Sbjct: 880 STDNSESGYNKSGTGEYGSGGGYNKSSTDNYESGYNKS 917
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,623
Number of Sequences: 37544
Number of extensions: 353966
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -