Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M20
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
 Frame = +1

Query: 292 PTGRLKSTGRTSSHTHLPCYRENHT-CRCHCLQLHCCMLSSTC 417
           P G    +  T+      C  E H    CHC     C    TC
Sbjct: 719 PRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTC 761


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 442 SDERTLGSSTCWKACSSVTEDNDI 371
           SD R    + CW   S+   D DI
Sbjct: 205 SDRRKGSIARCWSLDSTAASDEDI 228


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 367 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 281
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,522
Number of Sequences: 438
Number of extensions: 4721
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)