Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M19
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   2.4  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    27   3.2  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   4.2  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   9.6  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 501 ADAVEHLCVRCDKMFRMTRD 560
           A+A+EH CVRC +   MT+D
Sbjct: 366 ANALEHACVRCVEKGIMTKD 385


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 251 LSTEQLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYINPPPRPRPMTTW 406
           LS + + Q +      PK   + G  L++ P +   +    P P+P+P T W
Sbjct: 43  LSRDNVQQLVNKMISLPKERTSDGVLLQL-PETVTPLPRAKPLPKPKPETKW 93


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 448 SPWDPGTNXRGIYIPRSHRSRSRRWIYVYDR 356
           SP DP T  + ++  R + ++  RW Y Y R
Sbjct: 43  SPLDPNTPVKRLFFMRINIAQFSRWDYPYPR 73


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 447 DSGRGSLGSTPRSDSDEEADAVEHLCVRCD 536
           + G   +   P  D +E AD VEH CV+ D
Sbjct: 190 EDGAHGVHEHPVYDIEECADGVEHECVKDD 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,132
Number of Sequences: 5004
Number of extensions: 52515
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)