Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M19
         (811 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.      42   0.003
BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.     42   0.003
AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.      42   0.003
BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1...    38   0.043
AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.     38   0.043
AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa li...    31   3.7  
AY320819-1|AAQ22112.1|   77|Homo sapiens immunoglobulin kappa ch...    30   8.6  

>BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.
          Length = 318

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVXSD-------SRYACC 635
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCC 101


>BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.
          Length = 347

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVXSD-------SRYACC 635
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC
Sbjct: 80  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCC 130


>AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.
          Length = 318

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +3

Query: 504 DAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRVXSD-------SRYACC 635
           D+   +C RC   + ++  G  V+++ C YHWGRV S        S+Y CC
Sbjct: 51  DSSCRVCCRCGTEYLVSSSGRCVRDQLCYYHWGRVRSSQVAGGRVSQYTCC 101


>BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1
            homolog (S. cerevisiae) protein.
          Length = 1221

 Score = 37.9 bits (84), Expect = 0.043
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +3

Query: 522  CVRCDKMFRMTRDGEYVKEETCLYHWGRVXS-------DSRYACC 635
            C RC   + ++  G  +++E C YHWGR+         +++Y CC
Sbjct: 973  CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCC 1017


>AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.
          Length = 1239

 Score = 37.9 bits (84), Expect = 0.043
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +3

Query: 522  CVRCDKMFRMTRDGEYVKEETCLYHWGRVXS-------DSRYACC 635
            C RC   + ++  G  +++E C YHWGR+         +++Y CC
Sbjct: 991  CCRCGTEYLVSSSGRCIRDEECYYHWGRLRRNRVAGGWETQYMCC 1035


>AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 104

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 34  ARTSNSSSALVFRLYVYTSQPRN--MHFCIQFHDW 132
           AR S S S   F L + + QP +  +++C Q+HDW
Sbjct: 57  ARFSGSGSGTEFTLTITSLQPEDFAVYYCQQYHDW 91


>AY320819-1|AAQ22112.1|   77|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 77

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   YWISTAPARAIARTSNSSSALVFRLYVYTSQPRNM--HFCIQFHDW 132
           Y  ST      AR S S S   F L + + Q  +   ++C Q+HDW
Sbjct: 27  YGASTRATGISARFSGSGSGTEFTLTISSLQSEDFATYYCQQYHDW 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,930,345
Number of Sequences: 237096
Number of extensions: 2194251
Number of successful extensions: 9115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9113
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)