Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M19
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical...    33   0.18 
AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    28   9.1  

>AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13b protein.
          Length = 490

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 293 LSPKRMWTLGYPLEIEPNSTKAVVYINPPPRP--RPMTTWDVNA 418
           L  K  +   YPLE++    KA VYI   P+    P  TWD++A
Sbjct: 246 LKVKAAYNKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDA 289


>AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13a protein.
          Length = 487

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 293 LSPKRMWTLGYPLEIEPNSTKAVVYINPPPRP--RPMTTWDVNA 418
           L  K  +   YPLE++    KA VYI   P+    P  TWD++A
Sbjct: 243 LKVKAAYNKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDA 286


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 445 PWDPGTNXRGIYIPRSHR 392
           PWDPGT  R I  P++ R
Sbjct: 501 PWDPGTQQRDIQSPQTQR 518


>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 332 EIEPNS--TKAVVYINPPPRPRPMTTWDVNAPXICSRVP 442
           E  P+S  T+   +  PPPRPRP T   V  P +  ++P
Sbjct: 79  ETSPSSSTTRRHAFAPPPPRPRPPT---VPLPTVTQQIP 114


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 332 EIEPNS--TKAVVYINPPPRPRPMTTWDVNAPXICSRVP 442
           E  P+S  T+   +  PPPRPRP T   V  P +  ++P
Sbjct: 134 ETSPSSSTTRRHAFAPPPPRPRPPT---VPLPTVTQQIP 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,957
Number of Sequences: 27780
Number of extensions: 324641
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)