Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M18
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824...    30   2.0  
09_06_0254 - 21872694-21872873,21872992-21873046,21873548-218736...    28   8.1  

>06_03_0954 -
           26281937-26282143,26282232-26282286,26282430-26282482,
           26282587-26282663,26282734-26282857,26282947-26283072,
           26283463-26283616,26283709-26283817,26283911-26283974,
           26284782-26284898
          Length = 361

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 159 GVLEC--GQEIVKYVHLHSHTQRSQSALC*ATLSR 61
           G+ +C   Q++V ++H H +T+ S SA+C   L R
Sbjct: 273 GIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDR 307


>09_06_0254 -
           21872694-21872873,21872992-21873046,21873548-21873600,
           21873683-21873759,21873842-21873965,21874050-21874175,
           21874861-21875011,21875112-21875220,21875791-21875854,
           21876334-21876450
          Length = 351

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 177 ILILS*GVLEC--GQEIVKYVHLHSHTQRSQSALC 79
           I++   G+ +C   QE+V +VH   +T+ S SA+C
Sbjct: 266 IVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVC 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,083
Number of Sequences: 37544
Number of extensions: 245923
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)