Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M14
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0114 - 886404-887111                                             31   1.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    30   2.6  
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012     29   5.9  

>11_01_0114 - 886404-887111
          Length = 235

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 414 TPSSSTNGTETLVPEDNLYALMPPFETFLNVD----KTARLRHFFDNVKTGELIIGAVIN 581
           T +++ NG+ +++P   + A  PPF T  + D    +  R R          L++  V+ 
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRRRRRRRCLCCCLLVTLVVLLVLA 64

Query: 582 RTASGMMLKVLCTAGPTSRYVA 647
            T   + L VL    PT+R V+
Sbjct: 65  ITLLVLFLTVLRVRDPTTRLVS 86


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = -2

Query: 493 VSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEESNKAPASLAM 365
           ++ G +   + +SG+  S+  VDD GVSS+ EE  +A A+LA+
Sbjct: 114 INMGLLVGRRRNSGSEESI--VDDGGVSSNDEEHREAKAALAV 154


>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
          Length = 401

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 773 IWNNFYDFAANSVI-HQVVS*HIFLVNSLNNISYW 672
           +W NF DFA N ++ HQ+     F ++ +NN+  W
Sbjct: 80  VWQNFEDFADNLMLHHQIAHLDTFQLH-VNNVYRW 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,894
Number of Sequences: 37544
Number of extensions: 403702
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)