Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M13
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 38 0.012
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 37 0.021
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 31 0.80
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 3.2
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 28 9.8
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 28 9.8
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 9.8
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 37.5 bits (83), Expect = 0.012
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEG 500
PFP+P P P K P P+ H P+P+P P P + + P
Sbjct: 30 PFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPF 89
Query: 501 ALPXYMSXSTD---PSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXP 650
P S P+P + P + F P P P+ +P P
Sbjct: 90 PKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFP 142
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 318 FPFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
FP P P K +P+P K +P P+ H P+P+P P P
Sbjct: 201 FPKPMPIPKPMPFP--KPMPKPMPKHKPKPFPKPMLFPKP 238
Score = 35.1 bits (77), Expect = 0.065
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P P P KH P P K + +P + +P+P P + P P
Sbjct: 216 PMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254
Score = 34.7 bits (76), Expect = 0.086
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 1/112 (0%)
Frame = +3
Query: 318 FPFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKE 497
FP P P K P P K P+P + P+P P + P P +P K
Sbjct: 103 FPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKP 162
Query: 498 GALP-XYMSXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXP 650
+ P P P P + F P P P+ +P P
Sbjct: 163 KSEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFP 214
Score = 34.7 bits (76), Expect = 0.086
Identities = 30/119 (25%), Positives = 41/119 (34%)
Frame = +3
Query: 294 KP*LSLRKFPFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRT 473
KP L + PFP P K P K P+P + P+P P + P P + +
Sbjct: 143 KPMLFPKPMPFPKPMPKSKP----KSEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKP 198
Query: 474 ATLPSRKEGALPXYMSXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXP 650
P K +P M P P P + +F P P P +P P
Sbjct: 199 MLFP--KPMPIPKPMPF-PKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254
Score = 32.3 bits (70), Expect = 0.46
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 2/118 (1%)
Frame = +3
Query: 279 TRRSTKP*LSLRKFPFPTPXEKHIPYPVEK--KIPYPVKVHVPQPYPXCQTCPLPS*RDC 452
++ ++P S FP P P K P P+ K P+P + P+P P + P P
Sbjct: 24 SKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLF 83
Query: 453 QGTSSRTATLPSRKEGALPXYMSXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYP 626
+P K + P + + P P P + +F P P P
Sbjct: 84 PKPMPFPKPMPKSKPKSEP-FPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 140
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
PFP P P P+ K +P+P + P+P P P P
Sbjct: 228 PFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKP 266
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 318 FPFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
FP P P K +P+P P P +P+P P + P P
Sbjct: 235 FPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKP 274
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHV--PQPYPXCQTCPLPS*RDCQGTSSRTATLPSRK 494
PFP P P P+ K +P+P + P P+P P+P S+ + P
Sbjct: 122 PFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPK----PMP--------KSKPKSEPFPN 169
Query: 495 EGALPXYMSXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXP 650
P M P P P + +F P P P +P P
Sbjct: 170 PMPFPKPM-PKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 220
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Frame = +3
Query: 318 FPFPTPXEKHIPYP----VEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLP 485
FP P P K +P+P K +P+P + +P P+P + + +P
Sbjct: 129 FPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMP 188
Query: 486 SRKEGALPXYM-----SXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXP 650
K P M P P P + F P P P+ +P P
Sbjct: 189 KHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFP 248
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 327 PTPXEKHIPYPVEKKIPYPVKVHVPQPYP 413
P P +H+P PV ++P P++V VP P P
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVP 177
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 309 LRKFPFPTPXEKHIPYPVEKKIPYPVKVHVPQP-YPXCQTCPLPS 440
++ P P P + +P P+ +P PV V QP Y CP P+
Sbjct: 153 IQHVPVPVPVQ--VPVPIRVPVPVPVPTPVYQPTYCAVPPCPAPA 195
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/74 (32%), Positives = 29/74 (39%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEG 500
P P P P PV + +P PV V VP P P+P+ Q T A P
Sbjct: 142 PCPAPVA---PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT-PVYQPT--YCAVPPCPAPA 195
Query: 501 ALPXYMSXSTDPSP 542
A P Y + P P
Sbjct: 196 ATPVYAQPAPRPMP 209
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 452
P P P +P PV + +P P+ + +P P P P+P +C
Sbjct: 6 PIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P P P P PV +P PV V +P P P P+P
Sbjct: 2 PPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P P P +P P P PV + +P P P P+P
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVP 42
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 321 PFPTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTC 428
P P P +P P+ +P PV V VP C C
Sbjct: 18 PVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNCCSCC 53
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical
protein E01B7.1 protein.
Length = 410
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 345 HIPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLP---SRKEGALPXY 515
H YP+ +I YP ++ +P P QT P P+ +R +T+P + +P
Sbjct: 312 HRNYPMISEIRYP-DLNTMRPEPTAQTPPAPAAPPAAPALNRQSTIPPVAMTQRPMIPPS 370
Query: 516 MSXSTDPSPSRYMCQNLTPL 575
+ ST P+P + + P+
Sbjct: 371 LPSSTPPAPLKPVAPPTPPI 390
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 321 PFPTPXEKH---IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P P P EK +P PVE+ P P V P P P + P P
Sbjct: 202 PMPVPVEKAPEPVPAPVEQIAPPPAPVQDPAPAPVEPSDPAP 243
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 2/122 (1%)
Frame = +3
Query: 321 PFPTPXEKHIPYPV--EKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRK 494
P P E P P E P P P P P + P P+ AT P+ +
Sbjct: 545 PSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPA----PAAEETPATAPAAE 600
Query: 495 EGALPXYMSXSTDPSPSRYMCQNLTPLKRKFMFXSKCTCPXPYPVXXXVPXPXKGSRXCX 674
E P + + D +P+ TP + + P P P P P +
Sbjct: 601 ETPAP---APAADETPAPAPAAEETPAPAPAVEET----PAPAPAVEETPAPAPAAEETP 653
Query: 675 LP 680
P
Sbjct: 654 AP 655
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +3
Query: 306 SLRKFPFPTPXEKHIPYPVEKKIPY--PVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTAT 479
++ + P P P + P P Y PV P P P + P P+ Q A
Sbjct: 638 AVEETPAPAPAAEETPAPAPAAAEYAAPVAEETPAPAPAAEETPAPA----QAAEETPAP 693
Query: 480 LPSRKE 497
P+ +E
Sbjct: 694 APAAEE 699
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 327 PTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P HIP P IP H P P QTCP P
Sbjct: 118 PPLQSAHIPPPAPSSIP----PHCLMPQPWYQTCPPP 150
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 327 PTPXEKHIPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 437
P HIP P IP H P P QTCP P
Sbjct: 118 PPLQSAHIPPPAPSSIP----PHCLMPQPWYQTCPPP 150
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 332 PXRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 448
P R+ P ++ PR + RSP+ PR +S + ++R
Sbjct: 92 PRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,154
Number of Sequences: 27780
Number of extensions: 199595
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -