Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M11
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    32   0.12 
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    31   0.20 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.82 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.9  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   5.8  

>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 769  HLTSYFTGXGPFSRQCRAGDGHFHFVRDFLLNGVGSGHFDFDF 641
            H+T+  TG G FS       G F  +R  + NG G G F+FDF
Sbjct: 1145 HVTTGQTGMGSFSMGTLT-QGSFLPIRLIVANGGGKGGFNFDF 1186


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 769 HLTSYFTGXGPFSRQCRAGDGHFHFVRDFLLNGVGSGHFDFDFV 638
           H T+  TG   FS      D +   VR  + NG G G FDF FV
Sbjct: 533 HATNGQTGIASFSMGSLTADTYVP-VRFVVANGAGKGGFDFSFV 575


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 472 SSRRYRGRVSRLYTEQAPSLPPQQF 398
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 500 YLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYLMKSRSTFDKPYEVKVKVPTPYTVE 679
           +L  T S+R+   PSR+    +     +TP KR+ L +  S   +   V     TP  + 
Sbjct: 17  HLVGTLSQRRHFTPSRSRYTPRSAQRTVTPHKRRALARRNSLARRRSNV-FSATTPRDIL 75

Query: 680 KKIPYEV-KVPVPSP 721
           + +   + K PVPSP
Sbjct: 76  RMLSRALAKNPVPSP 90


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 202 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 89
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 497 PYLSPTPSKRKFPLPSRNTSNTQY 568
           P++SP+P   K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,354
Number of Sequences: 5004
Number of extensions: 48212
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)