Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M11
         (838 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for ...    31   3.9  
S74659-1|AAC60643.2|  102|Homo sapiens aggrecan keratan sulfate ...    31   3.9  
BC080554-1|AAH80554.1|  659|Homo sapiens splicing factor, argini...    30   9.0  
AY358944-1|AAQ89303.1|  594|Homo sapiens SWAP2 protein.                30   9.0  
AF042810-1|AAC82340.1|  659|Homo sapiens suppressor of white-apr...    30   9.0  
AF042800-1|AAC82339.1|  659|Homo sapiens suppressor of white apr...    30   9.0  

>X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for
           integrin beta 1 subunit. ).
          Length = 798

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 497 PYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRK 601
           PY+S TP+K + P  S     T ++Y N+  L  K
Sbjct: 194 PYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNK 228


>S74659-1|AAC60643.2|  102|Homo sapiens aggrecan keratan sulfate
           domain protein.
          Length = 102

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +2

Query: 479 PMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYLMKSRSTFDKPYEVKVKV 658
           P   + P  S  PS  + P PS   S ++  + ++ P     L  S    ++P+  K   
Sbjct: 11  PSATEVPSASEEPSPSEVPFPSEEPSPSEEPFPSVRPFPSVELFPS----EEPFPSKEPS 66

Query: 659 PTPYTVEKKIPYEVKVPVPSPT 724
           P+      + PY    PVPS T
Sbjct: 67  PSEEPSASEEPYTPSPPVPSWT 88


>BC080554-1|AAH80554.1|  659|Homo sapiens splicing factor,
           arginine/serine-rich 16 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +3

Query: 459 YRREESTL*GESARTSALHRRKESSLYRQGIRQIPSIRT*TLHR*KESTL*SQGPRLTSL 638
           Y R  +   G   R  +  R      YR+G R    +R  +  R + S   S   R  SL
Sbjct: 438 YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGR---GLRHHSSSRSRSSWSLSPS-RSRSL 493

Query: 639 TKSKSKCPLPTPLRRKSLTK*KCPSPA 719
           T+S+S  P P+  R +S ++ + PSP+
Sbjct: 494 TRSRSHSPSPSQSRSRSRSRSQSPSPS 520


>AY358944-1|AAQ89303.1|  594|Homo sapiens SWAP2 protein.
          Length = 594

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +3

Query: 459 YRREESTL*GESARTSALHRRKESSLYRQGIRQIPSIRT*TLHR*KESTL*SQGPRLTSL 638
           Y R  +   G   R  +  R      YR+G R    +R  +  R + S   S   R  SL
Sbjct: 453 YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGR---GLRHHSSSRSRSSWSLSPS-RSRSL 508

Query: 639 TKSKSKCPLPTPLRRKSLTK*KCPSPA 719
           T+S+S  P P+  R +S ++ + PSP+
Sbjct: 509 TRSRSHSPSPSQSRSRSRSRSQSPSPS 535


>AF042810-1|AAC82340.1|  659|Homo sapiens suppressor of
           white-apricot homolog 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +3

Query: 459 YRREESTL*GESARTSALHRRKESSLYRQGIRQIPSIRT*TLHR*KESTL*SQGPRLTSL 638
           Y R  +   G   R  +  R      YR+G R    +R  +  R + S   S   R  SL
Sbjct: 438 YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGR---GLRHHSSSRSRSSWSLSPS-RSRSL 493

Query: 639 TKSKSKCPLPTPLRRKSLTK*KCPSPA 719
           T+S+S  P P+  R +S ++ + PSP+
Sbjct: 494 TRSRSHSPSPSQSRSRSRSRSQSPSPS 520


>AF042800-1|AAC82339.1|  659|Homo sapiens suppressor of white
           apricot homolog 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +3

Query: 459 YRREESTL*GESARTSALHRRKESSLYRQGIRQIPSIRT*TLHR*KESTL*SQGPRLTSL 638
           Y R  +   G   R  +  R      YR+G R    +R  +  R + S   S   R  SL
Sbjct: 438 YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGR---GLRHHSSSRSRSSWSLSPS-RSRSL 493

Query: 639 TKSKSKCPLPTPLRRKSLTK*KCPSPA 719
           T+S+S  P P+  R +S ++ + PSP+
Sbjct: 494 TRSRSHSPSPSQSRSRSRSRSQSPSPS 520


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,456,944
Number of Sequences: 237096
Number of extensions: 1920690
Number of successful extensions: 5198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5172
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)