Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M11
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   3.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 48  TVIFGGIVGRGCLCQGGERHTEGS 119
           T++F GIVG G  C     HT+ S
Sbjct: 411 TLLFSGIVGFGAYCAA---HTDSS 431


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 48  TVIFGGIVGRGCLCQGGERHTEGS 119
           T++F GIVG G  C     HT+ S
Sbjct: 411 TLLFSGIVGFGAYCAA---HTDSS 431


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 646 QSQSAHSLHR*EENPLRSESARP 714
           +  S HS+   EEN L SES  P
Sbjct: 79  EKDSIHSIDGDEENGLTSESTDP 101


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 655 SAHSLHR*EENPLRSESARP 714
           S HS+   EEN L SES  P
Sbjct: 111 SIHSIDGDEENGLTSESTDP 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 605 LMKSRSTFDKPYEVKVKVPTPYTVEKKIPYEVK 703
           L++S  +  + Y  KVK    Y   +K+P E++
Sbjct: 377 LIQSLDSSRRQYREKVKQVEEYMAYRKLPREMR 409


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 605 LMKSRSTFDKPYEVKVKVPTPYTVEKKIPYEVK 703
           L++S  +  + Y  KVK    Y   +K+P E++
Sbjct: 345 LIQSLDSSRRQYREKVKQVEEYMAYRKLPREMR 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,348
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)