Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M08
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 34 0.021
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 31 0.20
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.61
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 4.3
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 7.5
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 7.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 7.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.9
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 9.9
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 9.9
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.9
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 9.9
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 575 VPTYEVLDKR-DTLDEFKILFNKIKKIGIRVIVDLIPNYVFTNHTWFVQSENS 730
V Y+ +D R TL++ L + + +++++DL+ N+ H WF +S +S
Sbjct: 73 VSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSS 125
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.1 bits (67), Expect = 0.20
Identities = 28/89 (31%), Positives = 37/89 (41%)
Frame = -1
Query: 483 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 304
PT PSS S T+TA S T T + T SS Y+S SS
Sbjct: 464 PTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSPYYSNSS 515
Query: 303 LVIPVNCRLLASSSIFASPFLWSPTTYFA 217
+++P S S F+S SPT+ F+
Sbjct: 516 IIVPTTVSTSGSVSSFSSS--PSPTSSFS 542
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -1
Query: 480 TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 307
TR SSY + S + + ++ +P+S S+++ ++ +S + K SS+ S+S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
Score = 25.4 bits (53), Expect = 9.9
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -1
Query: 432 LGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFA 253
L A + I+ +S+ T ++T+ + SS+YF TSS P + +SSS +
Sbjct: 108 LQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSS 167
Query: 252 SPFLWSPTTYFASDMST 202
S S ++ +S S+
Sbjct: 168 SSSKSSSSSKSSSSSSS 184
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 611 VCHVCRALRKSALGRTRPE 555
VC +C +L K+A+GR RP+
Sbjct: 102 VCGLCVSLLKNAVGRPRPD 120
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -1
Query: 453 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 295
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 365 VLFWVAWLCMLAGAIAVI 418
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -1
Query: 441 GPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSS 262
GP +G+R + + + + T + + +QK S +Y + SL +P LL ++
Sbjct: 523 GPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLLIGTT 582
Query: 261 IF 256
F
Sbjct: 583 RF 584
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -3
Query: 703 MVGEHVVRYQINNHSYSDLLNFVKQNFEFVQCVTFVEHF----VSRHLDEHAL 557
MV + Q NH+Y+DLL ++ + +HF ++R L++H+L
Sbjct: 1447 MVAIQHLNIQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAIALARRLEKHSL 1499
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 275 NKRQFTGMTREEVLKYADDPFWVNLRWSLFVL 370
N G+TREE+ YA+ + WS++ +
Sbjct: 318 NNNPDDGLTREEMAPYAERVLVYPVNWSVYTM 349
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 462 TNSVPWSDW-TWSMPSNHKIYNRIW 533
T+S+P D W PS ++YN +W
Sbjct: 210 TSSIPKVDGKNWEYPSPQQMYNAMW 234
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 490 VQSDQGTEFVPCPGFGRAALGC-AYNDCNSPGEHAQPGHPE 371
VQS QG P PG ++ YND NS G H+ E
Sbjct: 247 VQSVQGRPLAPIPGRRPLSISSDLYNDSNS-GSHSNDDSDE 286
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 281 RQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 421
R + T EE + + +L W++ ++ W WL + A + +IV
Sbjct: 467 RVVSDSTNEETGQLIRETHDYSLGWTMTIVTWAIWLFLTALNLLLIV 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,208
Number of Sequences: 5004
Number of extensions: 63060
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -