Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M07
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 258 3e-69
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 255 2e-68
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 105 5e-23
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 105 5e-23
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 78 9e-15
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 77 2e-14
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 73 3e-13
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 71 8e-13
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 63 2e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 0.002
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 0.002
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 0.002
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.026
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.11
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 34 0.11
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 34 0.11
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 34 0.11
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 34 0.11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.11
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.32
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.56
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.75
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 1.3
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 2.3
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.3
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 2.3
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 2.3
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 3.0
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 29 3.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.0
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 5.3
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 7.0
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 7.0
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 28 9.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 258 bits (632), Expect = 3e-69
Identities = 136/189 (71%), Positives = 147/189 (77%), Gaps = 8/189 (4%)
Frame = +2
Query: 74 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 253
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 254 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 409
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 410 VDFSSEVTAALRVTXXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXX 589
VDFSSEVTAALRVT QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 121 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 590 XXXXXXYQT 616
+QT
Sbjct: 181 LGAEELFQT 189
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 255 bits (625), Expect = 2e-68
Identities = 135/189 (71%), Positives = 146/189 (77%), Gaps = 8/189 (4%)
Frame = +2
Query: 74 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 253
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 254 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 409
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 410 VDFSSEVTAALRVTXXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXX 589
VDFSSEVTAAL VT QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 121 VDFSSEVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 590 XXXXXXYQT 616
+QT
Sbjct: 181 LGAEELFQT 189
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 105 bits (251), Expect = 5e-23
Identities = 63/149 (42%), Positives = 85/149 (57%)
Frame = +2
Query: 125 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 304
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 305 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXXX 484
E LINLIDSPGHVDFS EVT+AL ++
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 485 XXXXQTETVLRQAIAERIKPILFMNKMDR 571
QTE ++RQ I IL +NK+DR
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDR 147
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 105 bits (251), Expect = 5e-23
Identities = 63/149 (42%), Positives = 85/149 (57%)
Frame = +2
Query: 125 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 304
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 305 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXXX 484
E LINLIDSPGHVDFS EVT+AL ++
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 485 XXXXQTETVLRQAIAERIKPILFMNKMDR 571
QTE ++RQ I IL +NK+DR
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDR 147
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 77.8 bits (183), Expect = 9e-15
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Frame = +2
Query: 107 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 283
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 284 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXX 463
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
Query: 464 XXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 571
TE +R AI ER+ L ++K+DR
Sbjct: 230 VMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 265
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 77.0 bits (181), Expect = 2e-14
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 286
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 287 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXX 466
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 467 XXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 571
TE +R AI ER+ L ++K+DR
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 140
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 72.5 bits (170), Expect = 3e-13
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Frame = +2
Query: 128 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 301
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 302 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXX 481
+ + KG INLID+PGHVDF EV +RV
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 482 XXXXXQTETVLRQAIAERIKPILFMNKMDR 571
QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 71.3 bits (167), Expect = 8e-13
Identities = 48/147 (32%), Positives = 72/147 (48%)
Frame = +2
Query: 128 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 307
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 308 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXXXX 487
+G+L+NLID+PGHVDFS+EV+ +L V
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 488 XXXQTETVLRQAIAERIKPILFMNKMD 568
QT A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 63.3 bits (147), Expect = 2e-10
Identities = 51/148 (34%), Positives = 68/148 (45%)
Frame = +2
Query: 128 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 307
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 308 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXXXX 487
+LE + + I + G IN+ID+PGHVDF+ EV ALRV
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 488 XXXQTETVLRQAIAERIKPILFMNKMDR 571
QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/102 (27%), Positives = 47/102 (46%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 313
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 314 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAA 439
++ I P + ++ N+I ++ + V AA
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA 145
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/102 (27%), Positives = 47/102 (46%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 313
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 314 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAA 439
++ I P + ++ N+I ++ + V AA
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA 146
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/102 (27%), Positives = 47/102 (46%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 313
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 314 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAA 439
++ I P + ++ N+I ++ + V AA
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA 146
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.026
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 122 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 301
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 302 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEV 430
+ E EE+ +T R E I L+D+PGH DF S +
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 265
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.026
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 122 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 301
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 302 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEV 430
+ E EE+ +T R E I L+D+PGH DF S +
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 283
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 283
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 34.3 bits (75), Expect = 0.11
Identities = 33/103 (32%), Positives = 51/103 (49%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 289
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 290 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 418
+ + E + + I + ++ K + I +ID+PGH DF
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDF 98
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 34.3 bits (75), Expect = 0.11
Identities = 33/103 (32%), Positives = 51/103 (49%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 289
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 290 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 418
+ + E + + I + ++ K + I +ID+PGH DF
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDF 98
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.11
Identities = 33/103 (32%), Positives = 51/103 (49%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 289
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 290 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 418
+ + E + + I + ++ K + I +ID+PGH DF
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDF 98
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.11
Identities = 33/103 (32%), Positives = 51/103 (49%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 289
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 290 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 418
+ + E + + I + ++ K + I +ID+PGH DF
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDF 98
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 283
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 110 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 205
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -1
Query: 531 SAIA*RSTVSVCTHTPDTQSTTTRDPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 352
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 351 SGFVMNTK 328
V K
Sbjct: 751 KAIVNKFK 758
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 113 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 238
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 165 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 344
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 345 TLTS 356
T TS
Sbjct: 329 TSTS 332
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 513 STVSVCTHTPDTQSTTTRDPSVTRS-AAVTSEEKSTCPGESIKLIKKP 373
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 342 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 166
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 165 P 163
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 396 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 271
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 490 HTRHTVNNHKGSISDTECSCYFRREINV 407
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 342 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 166
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 165 P 163
P
Sbjct: 102 P 102
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 513 STVSVCTHTPDTQSTTTRDPSVTRSAAVTSEEKSTCPGESIKLIKK 376
ST + + P ++TTT + T + VT K P E KL+KK
Sbjct: 763 STTAAPSTKPAEETTTTTEAPSTTTKPVTVAVKKVSPEEMEKLVKK 808
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 59 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 235
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 236 RFTDTRKDEQD 268
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 483 DTQSTTTRDPSVTRSAAVTSEEKSTCPGESIK 388
D+ +T R P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 161 DRRGRSQTCCGYSASCPSSHG 99
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 161 DRRGRSQTCCGYSASCPSSHG 99
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 28.7 bits (61), Expect = 5.3
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = +2
Query: 134 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 313
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 314 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 418
EK E ++ F I +D+PGH F
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSF 200
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 76 GEFHGRRDPWDDGQEAEYPQHVCDR 150
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 76 GEFHGRRDPWDDGQEAEYPQHVCDR 150
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 516 RSTVSVCTHTPDTQSTTTRDPSVTRSAAVTSEEKST 409
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 374 GFLINLIDSPGHVDFSSEVTAALRVTXXXXXXXXXXXXXXXQTETVLRQAIAERIKPILF 553
GFLI ID+PGH FS+ T + QT L+ I + ++
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 554 MNKMDR 571
+NK+DR
Sbjct: 608 LNKIDR 613
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 505 FSLYTHTRHTVNNHKGSISDTECS 434
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 505 FSLYTHTRHTVNNHKGSISDTECS 434
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,225
Number of Sequences: 27780
Number of extensions: 347968
Number of successful extensions: 1214
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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