Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M06
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.030
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.16 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.37 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    30   0.37 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.49 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.86 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    29   0.86 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 487 KTPPPPPXFXXKXPPXPPXAPXXPPXIVSPKXGXGPPP 374
           K+PPPPP       P P   P  PP   +P  G  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP---APIMGGPPPP 764



 Score = 29.5 bits (63), Expect = 0.65
 Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
 Frame = -3

Query: 481 PPPPPXFXXKXP-----PXPPXAP--XXPPXIVSPK--XGXGPPP 374
           PPPPP      P     P PP AP    PP    P    G GPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 481 PPPPPXFXXKXPPXPPXAP 425
           PPPPP      PP PP  P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -3

Query: 481 PPPPPXFXXKXP-PXPPX---APXXPPXIVSPKXGXGPPP 374
           PPPPP        P PP    AP  PP   +P  G  PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 29.1 bits (62), Expect = 0.86
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = -3

Query: 514 PXFFPXXXXKTPPPPPXFXXKXPPXP---PXAPXXPPXIVSPKXGXGPPP 374
           P   P      PP PP      PP P   P AP  PP   +P     P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 502 PXXXXKTPPPPPXFXXKXPPXPPXAPXXPP 413
           P      PP  P      PP PP AP  PP
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/66 (28%), Positives = 22/66 (33%)
 Frame = -2

Query: 449 PPPPPXGPXXXPGNCFPKXRGXAPPXXXXFFXXGGVFXXGXRVPKPXAPGGXSPLLXXXG 270
           PP PP  P   P    P     APP        G V       P+P AP   +P +    
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPP-PSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288

Query: 269 XKXLGP 252
              L P
Sbjct: 289 KPPLPP 294


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 26/70 (37%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
 Frame = +2

Query: 356 KKXXXXRGGPXPSFWGNNXRGXXGGPR-GXGGXFXXKXGGGG-GGF-XXXXGKKXGXPPG 526
           KK    R GP         RG  GG R G GG      GGG  GGF     G   G   G
Sbjct: 125 KKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184

Query: 527 GVXGXFLXYF 556
           G  G F   F
Sbjct: 185 GSRGGFRGRF 194


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/42 (42%), Positives = 18/42 (42%)
 Frame = +2

Query: 413 RGXXGGPRGXGGXFXXKXGGGGGGFXXXXGKKXGXPPGGVXG 538
           RG  GG RG  G F     GG GGF    G   G   GG  G
Sbjct: 8   RGGRGGSRGGRGGF----NGGRGGFGGGRGGARGGGRGGARG 45


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -3

Query: 502  PXXXXKTPPPPPXFXXKXPPXPPXAPXXPPXIVSP 398
            P     TPPPPP      PP  P  P  PP    P
Sbjct: 1700 PQMSAPTPPPPP-MSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = +2

Query: 401 GNNXRGXXGGPRGXGGXFXXKXGGGGGGFXXXXGKKXGXPPGGVXGXF 544
           G   RG  GG  G GG F  + G GGG      G + G P  G    F
Sbjct: 446 GGGSRGGRGGFGGRGG-FGGRGGFGGGRGRGRGGARSGNPNRGSVAPF 492


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +2

Query: 380 GPXPSFWGNNXRGXXGGPRGXGGXFXXKXGGGGGGFXXXXGKKXG 514
           G  P  +     G  GGP G GG      GGG GGF    G   G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG-FGGGPGGFGGGPGGHGG 270



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/41 (43%), Positives = 18/41 (43%)
 Frame = +2

Query: 416 GXXGGPRGXGGXFXXKXGGGGGGFXXXXGKKXGXPPGGVXG 538
           G  GGP G  G      GGG GGF    G   G  PGG  G
Sbjct: 225 GFGGGPGGFEGG-PGGFGGGPGGFGGGLG-GFGGGPGGFGG 263



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 412 PGXFXGPXGGGGGFXPXKXGGG-GGFXXXXXEKKXGPPXXG 531
           PG F G  GG GG  P   GGG GGF         GP   G
Sbjct: 230 PGGFEGGPGGFGG-GPGGFGGGLGGFGGGPGGFGGGPGGHG 269



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +2

Query: 446 GXFXXKXGGGGGGFXXXXGKKXGXPPG-GVXGXF 544
           G      G  GGGF    G   G PPG G  G F
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGF 210



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 415 GXFXGPXGGGGGFXPXKXGGGGGF 486
           G F G  GGG G  P   GG GGF
Sbjct: 188 GGFGG-FGGGSGGPPPGPGGFGGF 210



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 416 GXXGGPRGXGGXFXXKXGGGGGGFXXXXGKKXGXPPGGVXG 538
           G  GGP    G F    G GG G         G  PGG  G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 514 PXFFPXXXXKTPPPPPXFXXKXPPXPPXAPXXP 416
           P   P    K+PP  P      PP PP  P  P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 502 PXXXXKTPPPPPXFXXKXPPXPPXAPXXPP 413
           P    ++PPPPP       P P   P  PP
Sbjct: 412 PARPTESPPPPPISSSSTTPRPDDKPSLPP 441


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 502 PXXXXKTPPPPPXFXXKXPPXPPXAP 425
           P      PPPPP F     P PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,129
Number of Sequences: 5004
Number of extensions: 27446
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)