Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M03
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 285 4e-78
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 158 1e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 156 3e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 130 3e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 4e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 2e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 4e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.010
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.13
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 29 0.89
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 4.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 4.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 285 bits (700), Expect = 4e-78
Identities = 134/166 (80%), Positives = 141/166 (84%)
Frame = +3
Query: 249 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 428
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 429 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 608
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 609 GVSHTVPIYEGYALPHAIXXXXXXXXXXXXYS*RSSPERGYSFTTT 746
GV+HTVPIYEGYALPHAI Y + ERGY+F+TT
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTT 203
Score = 70.1 bits (164), Expect = 4e-13
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +1
Query: 139 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 246
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 158 bits (383), Expect = 1e-39
Identities = 71/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Frame = +3
Query: 264 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 440
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 441 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 620
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 621 TVPIYEGYALPHAI 662
+VPIY+G+++P AI
Sbjct: 167 SVPIYDGFSIPSAI 180
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 246
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 156 bits (379), Expect = 3e-39
Identities = 70/154 (45%), Positives = 102/154 (66%)
Frame = +3
Query: 285 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 464
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 465 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 644
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 645 ALPHAIXXXXXXXXXXXXYS*RSSPERGYSFTTT 746
L H + Y +GY+F T
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRT 203
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 145 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 246
E A +V+DNG+G K G+A D+ PR FPS G+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 130 bits (314), Expect = 3e-31
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Frame = +3
Query: 288 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 464
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 465 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 620
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 621 TVPIYEGYALPHAI 662
+P+ EGY + +I
Sbjct: 193 IIPVAEGYVIGSSI 206
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPS 234
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.4 bits (197), Expect = 4e-17
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +3
Query: 330 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 509
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 510 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 650
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 39.9 bits (89), Expect = 5e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 246
+EV+A+V+D GS + GF+G+D P+ V PS G+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 2e-16
Identities = 39/125 (31%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +3
Query: 276 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 452
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 453 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 626
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 627 PIYEG 641
P+ G
Sbjct: 181 PVLNG 185
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVF 228
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 73.3 bits (172), Expect = 4e-14
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Frame = +3
Query: 249 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 422
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 423 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 602
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 603 GDGVSHTVPIYEGYALPHAI 662
G + P+ +G + I
Sbjct: 157 GSDNASVTPVVDGLIIRKGI 176
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRG 243
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 345 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 512
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 513 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 641
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.010
Identities = 27/76 (35%), Positives = 34/76 (44%)
Frame = +1
Query: 520 TRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSXT 699
++P TSP+ P +R P VP +S P P P PS P PS P+ TS
Sbjct: 997 SKPVSTSPAAPLARV--PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTS-- 1048
Query: 700 THEDPHPSAXTRSLPP 747
T P S+ S PP
Sbjct: 1049 TPPVPKSSSGAPSAPP 1064
Score = 32.3 bits (70), Expect = 0.095
Identities = 23/72 (31%), Positives = 27/72 (37%)
Frame = +1
Query: 529 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSXTTHE 708
P T+P P T PV P S P+ P P PS+ P PS PV
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS--GAPPVPAPSGIPP 1093
Query: 709 DPHPSAXTRSLP 744
P PS +P
Sbjct: 1094 VPKPSVAAPPVP 1105
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 526 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 663
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 517 STRPPCTSPSKPCSRCTRP-VVPPVSCWTP-ATVSPTPCPSTRDTHSPTPSCVWT*PVAT 690
S PP PS P PPV TP A + P P P+ + P PS V+T
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVP--TPSAGLPPVPVPTAKAPPVPAPSSE-APSVST 1251
Query: 691 SXTTHEDPHPSA 726
++ PH +A
Sbjct: 1252 PRSSVPSPHSNA 1263
Score = 26.2 bits (55), Expect = 6.3
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = +1
Query: 526 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSXT 699
PP +PS +P VPPV P+ P P PS P PS T P + +
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS---TAPPVPTPS 1223
Query: 700 THEDPHPSAXTRSLPP 747
P P T PP
Sbjct: 1224 AGLPPVP-VPTAKAPP 1238
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 405 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 548
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.13
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 505 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPSCVWT*P 681
C+ ++ PP T S S P VPP S T + PT ST SP P+ +
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230
Query: 682 VATSXTTHEDPHPSA-XTRSLPP 747
+TS T S T ++PP
Sbjct: 231 TSTSIPTGGSSSLSTPITPTVPP 253
Score = 30.7 bits (66), Expect = 0.29
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 505 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPSCVWT*P 681
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT------ 167
Query: 682 VATSXTTHEDPHPSAXTRSL 741
+TS TT P+ + SL
Sbjct: 168 TSTSCTTSTSIPPTGGSSSL 187
Score = 29.9 bits (64), Expect = 0.51
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 508 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVA 687
S ST PP S S + + + SC T ++ PT +T T + P+ T
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT 424
Query: 688 TSXTTHED-PHPSAXTRSLPPA 750
T+ TT P+ S S P A
Sbjct: 425 TNCTTSTSVPYTSTPVTSTPLA 446
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 508 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVA 687
S + P + S C+ T +PP T P ST T +P P P +
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP------PAS 321
Query: 688 TSXT-THEDPHPSAXT 732
TS T T P PS T
Sbjct: 322 TSSTGTSSSPLPSTST 337
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 514 HSTRP--PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVA 687
+ST P P P+ S T P PP S + T S +P PST T T + + +
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPP--PPASTSSTGT-SSSPLPST-STSCTTSTSIPPTGNS 351
Query: 688 TSXTTHEDPHPSAXTRSLPP 747
T+ T P S + S PP
Sbjct: 352 TTPVTPTVPPTSTSSTSTPP 371
Score = 26.6 bits (56), Expect = 4.7
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Frame = +1
Query: 517 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTP----SCVWT*P 681
ST P T S S P VPP S T + PT ST SP P SC +
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 290
Query: 682 V-----ATSXTTHEDPHPSAXTRSLPP 747
+ +T+ T P S + S PP
Sbjct: 291 IPPTGNSTTPVTPTVPPTSTSSTSTPP 317
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 29.1 bits (62), Expect = 0.89
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 559 RCTRPVVPPVSCWTPATVSP-TPCPSTRDTHSPTPSCVWT*PVATSXTTHEDPHPSA 726
R P P V + A SP TP P ++T +P+ S P ATS T HP+A
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS--TANRRHPTA 554
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 550 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 654
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 550 PCSRCTRPVVPPVSCWTPATVSPTPCPST 636
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 544 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PVATSXTTHED 711
S+ S T P PP + T PA SP P P +T H PT S PV +H +
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV--QQPSHPN 955
Query: 712 PHPSAXTRS 738
P+ +S
Sbjct: 956 PYTPVAPQS 964
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 526 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 633
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 517 STRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSX 696
++ PP ++ +KP + S PAT + T T P+ P AT+
Sbjct: 350 TSAPPLSNNTKPAEGANQ-TSSGFSFGKPATDTTTSTSKTGPLFGNKPADPSAKPGATAS 408
Query: 697 TTHEDPHPSA 726
TT +P PS+
Sbjct: 409 TTPSEPPPSS 418
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 532 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATS 693
C +PS+ C + PV + T S TP P+T + +PTP+ T A S
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTSTTTTAQS 875
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 447 LLTEAPLNPKANREKMTQIMFETFN 521
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 547 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSXTTHE 708
KP S+ TRP +P +T T S P P + + ++ P +S + E
Sbjct: 65 KPSSKATRPYIP---SYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSSQSQE 115
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 184 TYRSHCLLPTRQLLRRTS*ISEI 116
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,860
Number of Sequences: 5004
Number of extensions: 70899
Number of successful extensions: 261
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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