Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M02
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    73   5e-14
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.4  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 38/87 (43%), Positives = 59/87 (67%)
 Frame = +2

Query: 398 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKNIYQEI 577
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + + Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117

Query: 578 RHAAEAHRQTRKHIRNWIKPGMTMIDI 658
           R AAE HRQ R++ ++ IKPGM+M+D+
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDV 144



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +3

Query: 660 VEELEKTARRLIGEDGLXAGLAXPTGCXRNXCAXHYTPXXGDT 788
           V  +E T R L+ EDGL +G+  PTG   N CA HYTP  GDT
Sbjct: 145 VNTIENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDT 187


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 643 HARLDPIADVFSCLPVGFSSMS 578
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 405 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRKS 578
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 579 DMLLKPTGRQENTSAIGSSL 638
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 590 EAHRQTRKHIRNWIKPGMTMIDIC 661
           E+H +T +H +  + P   +ID+C
Sbjct: 397 ESHSRTLRHEKRHVSPKSPLIDVC 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,772
Number of Sequences: 5004
Number of extensions: 37056
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)