Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_M02
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 97 2e-20
U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 2.3
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 29 3.0
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 4.0
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 4.0
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 4.0
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 4.0
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +2
Query: 419 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKNIYQEIRHAAE 592
P+ E FPDG FP G +D P +G D R A +R ++EEK+ALD ++ ++Q+ R +AE
Sbjct: 81 PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138
Query: 593 AHRQTRKHIRNWIKPGMTMIDICXRV 670
AHRQ RK++++WIKPGMTMI+IC R+
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERL 164
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/42 (69%), Positives = 30/42 (71%)
Frame = +3
Query: 663 EELEKTARRLIGEDGLXAGLAXPTGCXRNXCAXHYTPXXGDT 788
E LE T+RRLI E GL AGLA PTGC N CA HYTP GDT
Sbjct: 162 ERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTPNAGDT 203
>U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical
protein F30B5.8 protein.
Length = 294
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 36 VAFLRIVYISFPINYYLNNSAL 101
+AFLR++ I FP++YY N S +
Sbjct: 102 IAFLRVIAICFPVSYYNNRSKI 123
>Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical
protein ZK1128.5 protein.
Length = 446
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 413 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKNIYQEIRHAA 589
++P+ EL +G + M H P G + R A K +F+S K + L K+IY H
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186
Query: 590 EAHR 601
E HR
Sbjct: 187 EWHR 190
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 669 LEKTARRLIGEDGLXAGLAXPTGCXRNXCAXHYTP 773
LEKT + E G+A PT + C HYTP
Sbjct: 68 LEKTGKLYKKEKNFTKGIAMPTCISIDNCICHYTP 102
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 512 NRFTSEEKRALDRLHKNIYQEIRH-AAEAHRQTRKHI 619
NR ++R +DR K + QEI+ AA+ H +H+
Sbjct: 24 NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 572 PDKYFYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 432
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 16 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 572 PDKYFYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 432
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 13 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 572 PDKYFYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 432
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 22 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 572 PDKYFYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 432
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 15 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,259
Number of Sequences: 27780
Number of extensions: 214196
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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