Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M01
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    29   5.5  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    29   5.5  

>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 298 PVLDHAICKSYPDSSKLKPXXXRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQV 119
           PV   +   S    S L      ++GPP+  +++++A+   L  VL AC   R+++   +
Sbjct: 645 PVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLI 704

Query: 118 TE*DLRN 98
           T   LRN
Sbjct: 705 T--GLRN 709


>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
            27071569-27071676,27071796-27071855,27072368-27072443,
            27072550-27072710,27076919-27076981,27077061-27077148,
            27077568-27078308,27078406-27079033,27079314-27079368,
            27082073-27083527
          Length = 1425

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 316  HLKDASPVLDHAICKSYPDSSKLKPXXXRTRGPPSIG 206
            +L D     +HA  K + D  KLKP      GPP +G
Sbjct: 1384 NLHDKPLPSEHASQKGFEDRVKLKPPLDLRSGPPHLG 1420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,828
Number of Sequences: 37544
Number of extensions: 278374
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)