Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_M01
         (785 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    26   1.1  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.7  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   4.6  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 314 MSALSTFDGSFCDYHGLSRVNGGNQGSIPEREPXKR-LPHPRKGSRRANYXSRXG 475
           M+A     G+   YH  +        + P   P  R LPH + G+  AN+ ++ G
Sbjct: 11  MTAAVVATGNTGSYHQSAAAAAAAAANAPVYVPSSRALPHSQYGAHSANFSAQNG 65


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +3

Query: 306 SFKCLPYQLSMVVSATTMVCHGLTGEIRVRFRRGS 410
           +F+ + Y+ +++++    +C  +  + RV  RRG+
Sbjct: 841 TFRTVRYETAVLLAGLLPICRAICEDTRVHSRRGT 875


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 SFKCLPYQLSMVVSATTMVCHGLTGEIRVRFRRGS 410
           +F+ + Y+ +++ +    +C  +  + RV  RRG+
Sbjct: 836 TFRTVRYETAVLPAGLVPICRAVAEDTRVHSRRGT 870


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,064
Number of Sequences: 2352
Number of extensions: 10572
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)