Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L24
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 124 9e-29
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 107 1e-23
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151... 33 0.22
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 29 6.3
03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309... 28 8.3
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 124 bits (299), Expect = 9e-29
Identities = 72/195 (36%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Frame = +1
Query: 250 GKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDM 429
GK ++ +DI V + S+ L +S K G +R+ GF+E + + F + N
Sbjct: 38 GKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITP 97
Query: 430 LEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN-TGKNEVTLEFHQNDDT 606
EK+LS+ G NWG + NG +LSFNVG+ AFE+ L V+Q GK +V LEFH +D T
Sbjct: 98 EEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTT 157
Query: 607 ----PVSLMEMRFHIPTSEVA----NDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQC 762
SLM++ FH+PTS + + + Q ++NKA V S S +A+ F +
Sbjct: 158 GGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGS-SEEAVVTFDGIAI 216
Query: 763 LTPRGRYDIKVXXTF 807
LTPRGRY +++ +F
Sbjct: 217 LTPRGRYSVELHLSF 231
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 107 bits (257), Expect = 1e-23
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Frame = +1
Query: 250 GKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDM 429
GK +I +D+ V + K ++ L + K+G +++ GF+E + + F + N
Sbjct: 75 GKTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSP 134
Query: 430 LEKELSLKGWNWGTAKFN------GAVLSFNVGTNTAFEIPLHYVSQCN-TGKNEVTLEF 588
EK+LS+ G NWG N G +L+F VG+ AFE+ L VSQ GK +V LEF
Sbjct: 135 DEKQLSVSGQNWGGIDINVTLSIVGNMLTFMVGSKQAFEVSLADVSQTQMQGKTDVLLEF 194
Query: 589 HQNDDT----PVSLMEMRFHIPTSEVA----NDLDAVEAFHQQVMNKASVISVSGDAIAI 744
H +D T SLM++ FH+PTS + A + + +M A V S S +A+
Sbjct: 195 HVDDTTGGNEKDSLMDLSFHVPTSNTQFLGDENRTAAQVLWETIMGVADVDS-SEEAVVT 253
Query: 745 FRELQCLTPRGRYDIKVXXTF 807
F + LTPRGRY +++ +F
Sbjct: 254 FEGIAILTPRGRYSVELHLSF 274
>08_01_0001 -
14186-14288,14473-14590,14671-14727,14943-15010,
15104-15144,15405-15461,15980-16041,16833-16929,
17016-17102,17171-17263,17394-17452,17653-17716
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 442 LSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQ 552
+SL+ + GTA F G F VG N + I LHY+ +
Sbjct: 137 VSLQNFPVGTAAFLGTTKGFRVGLNLSLAIALHYIPE 173
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 313 SWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAK 477
SWG+RL + G + E + + + FKA + +L+ E + K ++G AK
Sbjct: 189 SWGIRLKVAIGAARGLSFLHDAENQVIYRDFKA--SNILLDSEFNAKLSDFGLAK 241
>03_01_0399 +
3097878-3098141,3098254-3098547,3098659-3098886,
3099148-3099224,3099501-3099540,3099737-3099802,
3100305-3100706,3100777-3100888,3101445-3101530,
3101607-3101672
Length = 544
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +1
Query: 361 GGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKF---NGAVLSFNVGTNTAFEI 531
G + E+EK+ + FK Y K ++ ++ +G++ + F +E+
Sbjct: 421 GSLDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEV 480
Query: 532 PLHYVSQCNT-GKNEVTLEF--HQNDDTPVSLMEMRFHIPTSEVAN 660
LH + + G+ + D+T + +E F EV N
Sbjct: 481 YLHRIGRAGRFGRKGAVFNLLCGETDNTVMRKIETYFQHNVPEVRN 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,842,507
Number of Sequences: 37544
Number of extensions: 416079
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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